Pre_GI: BLASTP Hits

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Query: NC_007607:87000:95781 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 95781, End: 96008, Length: 228

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:102618102618102845228Shigella boydii Sb227 plasmid pSB4_227, complete sequenceplasmid maintenance protein4e-37153
NC_017319:192482:198443198443198670228Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceplasmid maintenance protein1e-36151
NC_004851:191709:198515198515198742228Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceplasmid maintenance protein1e-36151
NC_003198:3042000:305178630517863052013228Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein (assiciated with virulence)3e-26117
NC_004631:3030580:303769330376933037920228Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-26117
NC_012912:4167429:417252841725284172758231Dickeya zeae Ech1591, complete genomeputative plasmid protein3e-24110
NC_015740:2407500:242348224234822423712231Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeMvpT1e-2098.6
NC_015581:1043394:105424010542401054476237Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomevirulence-associated protein2e-1891.3
NC_008702:369965:376345376345376629285Azoarcus sp. BH72, complete genomeconserved hypothetical protein6e-1682.8
NC_010995:4297361:431437943143794314612234Cellvibrio japonicus Ueda107, complete genomepossible virulence-associated protein3e-1373.9
NC_008463:2467219:247859024785902478874285Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein3e-1270.5
NC_010278:1918000:192918819291881929418231Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,hypothetical protein3e-1270.5
NC_010939:1986263:199275919927591992989231Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein8e-1268.9
NC_009053:1942973:196787719678771968107231Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein8e-1268.9