Pre_GI: BLASTP Hits

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Query: NC_007607:87000:105714 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 105714, End: 106214, Length: 501

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:207950207950208540591Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein2e-91333
NC_010660:175200:191735191735192325591Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein2e-91333
NC_004851:191709:208067208067208657591Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein2e-91333
NC_007608:97092:110927110927111517591Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein1e-89328
NC_011749:34056:526805268053270591Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehypothetical protein2e-88324
NC_016846:24500:431214312143771651Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,hypothetical protein7e-43172
NC_009787:17344:332073320733773567Escherichia coli E24377A plasmid pETEC_35, complete sequencehypothetical protein1e-35148
NC_008260:1885969:189899118989911899701711Alcanivorax borkumensis SK2, complete genomehypothetical protein7e-1166.6
NC_013526:567500:580919580919581539621Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeDNA topoisomerase type IA zn finger domain protein1e-0962.8
NC_007498:357484:366565366565367332768Pelobacter carbinolicus DSM 2380, complete genometopoisomerase-associated Zn-finger domain protein1e-0652.8