Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3859154 Shigella dysenteriae Sd197, complete genome

Start: 3859154, End: 3859909, Length: 756

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:483253:504775504775505419645Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-69261
NC_003143:4105754:412724041272404127878639Yersinia pestis CO92, complete genomehypothetical protein1e-68259
NC_017168:1729922:175143817514381752046609Yersinia pestis A1122 chromosome, complete genomehypothetical protein4e-64244
NC_017154:3997810:401932640193264019934609Yersinia pestis D106004 chromosome, complete genomehypothetical protein4e-64244
NC_014029:4057696:407921240792124079820609Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-64244
NC_009381:321577:343094343094343702609Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-64244
NC_013353:3853082:388902538890253889621597Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein8e-49193
AP010958:3853082:388902538890253889621597Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein8e-49193
NC_011745:291422:297377297377298057681Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-39161