Pre_GI: BLASTP Hits

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Query: NC_007384:2251792:2264939 Shigella sonnei Ss046, complete genome

Start: 2264939, End: 2265220, Length: 282

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2341127:235430823543082354589282Shigella sonnei 53G, complete genomehypothetical protein4e-50196
NC_010473:2267851:228154522815452281826282Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-49193
AC_000091:2185369:219584921958492196130282Escherichia coli W3110 DNA, complete genomehypothetical protein2e-49193
NC_010468:1694729:170220117022011702482282Escherichia coli ATCC 8739, complete genomehypothetical protein2e-49193
CP002185:2347413:236110823611082361389282Escherichia coli W, complete genomeconserved hypothetical protein2e-49193
NC_000913:2180855:219053721905372190818282Escherichia coli K12, complete genomehypothetical protein2e-49193
NC_012759:2069326:208302020830202083301282Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-49193
NC_011741:2239637:225205622520562252337282Escherichia coli IAI1 chromosome, complete genomehypothetical protein7e-49192
CU928160:2239637:225205622520562252337282Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein7e-49192
NC_004741:2169877:218032821803282180609282Shigella flexneri 2a str. 2457T, complete genomehypothetical protein7e-46182
NC_017328:2225418:223967622396762239957282Shigella flexneri 2002017 chromosome, complete genomehypothetical protein7e-46182
NC_011745:2399313:241173524117352412016282Escherichia coli ED1a chromosome, complete genomehypothetical protein6e-46182
NC_011750:955451:963508963508963789282Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-45179
NC_013008:2851342:286403828640382864319282Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein9e-32135
NC_002655:2925787:293847729384772938758282Escherichia coli O157:H7 EDL933, complete genomehypothetical protein9e-32135
NC_002695:2854629:286824628682462868527282Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein9e-32135
NC_009792:642881:649472649472649804333Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1891.3
NC_011740:2220251:224230722423072242588282Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative exported protein4e-1683.6
NC_011353:2852362:286505728650572865218162Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein7e-1062.8