Pre_GI: BLASTP Hits

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Query: NC_007333:430000:449924 Thermobifida fusca YX, complete genome

Start: 449924, End: 454495, Length: 4572

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017186:8683964:8690906869090686945863681Amycolatopsis mediterranei S699 chromosome, complete genomeNB-ARC domain-containing protein1e-130468
NC_014318:8687448:8690850869085086945303681Amycolatopsis mediterranei U32 chromosome, complete genomeNB-ARC domain-containing protein1e-130468
NC_013510:1849751:1862641186264118651722532Thermomonospora curvata DSM 43183, complete genomeNB-ARC domain protein4e-98360
NC_013510:1849751:1855024185502418591754152Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-79298
NC_013757:1438812:1458928145892814615072580Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein5e-72274
NC_013757:900500:9101879101879131893003Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, SARP family6e-72273
NC_013757:1212308:1230217123021712331952979Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein4e-69264
NC_003888:6103534:6128360612836061310202661Streptomyces coelicolor A3(2), complete genomeATP /GTP-binding protein2e-66255
NC_014666:7838500:7846062784606278490703009Frankia sp. EuI1c chromosome, complete genomeNB-ARC domain protein7e-66253
NC_003888:5042283:5055828505582850587282901Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein1e-63246
NC_016582:4983222:4983222498322249870823861Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein1e-54216
NC_007777:1018824:1018824101882410216282805Frankia sp. CcI3, complete genomeputative ATP/GTP binding protein1e-53213
NC_009921:5681677:5687555568755556895822028Frankia sp. EAN1pec, complete genomeputative ATP/GTP binding protein2e-51206
NC_014666:1805806:1827973182797318308462874Frankia sp. EuI1c chromosome, complete genomesigma-70 region 2 domain protein1e-49199
NC_006363:36959:4500745007476552649Nocardia farcinica IFM 10152 plasmid pNF2, complete sequencehypothetical protein7e-45183
NC_008278:514600:5337995337995363272529Frankia alni ACN14a, complete genomeputative ATP/GTP binding protein1e-42176
NC_014666:3629696:3637375363737536396542280Frankia sp. EuI1c chromosome, complete genomehypothetical protein6e-38160
NC_013595:3541012:3559577355957735619822406Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-36155
NC_010981:425387:4318834318834397457863Wolbachia pipientis, complete genomeankyrin and tpr repeat domain protein6e-33144
NC_005125:4283345:4289005428900542917282724Gloeobacter violaceus PCC 7421, complete genomesimilar to kinesin light chain1e-30136
NC_012491:3736167:3766116376611637695353420Brevibacillus brevis NBRC 100599, complete genomehypothetical protein2e-29132
NC_013757:3651646:3667190366719036695712382Geodermatophilus obscurus DSM 43160, complete genomeNB-ARC domain protein1e-28130
NC_009973:178000:2139952139952173123318Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeTPR repeat-containing protein1e-28129
NC_019673:3041936:3051529305152930527791251Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-27127
NC_015434:666692:6780696780696803542286Verrucosispora maris AB-18-032 chromosome, complete genomeTPR repeat-containing protein1e-27127
NC_008278:3601959:3614846361484636180523207Frankia alni ACN14a, complete genomehypothetical protein; putative P-loop containing nucleotide triphosphate hydrolases and TIR domains3e-27125
NC_014666:1601972:1620253162025316265196267Frankia sp. EuI1c chromosome, complete genomehypothetical protein6e-27124
NC_014318:5586287:5601209560120956037942586Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-25119
NC_017186:5586328:5601422560142256038362415Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-24117
NC_018531:1900619:1912565191256519151142550Arthrobacter sp. Rue61a chromosome, complete genomenephrocystin5e-24114
NC_013929:3660321:3669043366904336716582616Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-23112
NC_017186:5586328:5599527559952756009391413Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein3e-21105
NC_009974:53865:5386553865567262862Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completeTPR repeat-containing protein3e-21105
NC_014391:6749156:6766968676696867694152448Micromonospora aurantiaca ATCC 27029 chromosome, complete genometetratricopeptide domain-containing protein2e-20102
NC_011726:1827000:1827925182792518302282304Cyanothece sp. PCC 8801, complete genomeTetratricopeptide TPR_2 repeat protein3e-1895.5
NC_009974:53865:7785377853804262574Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completeTPR repeat-containing protein3e-1895.5
NC_017186:5586328:5597540559754055987151176Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein4e-1894.7
NC_014318:5586287:5597499559749955986741176Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein4e-1894.7
NC_011060:1538375:1551720155172015555713852Pelodictyon phaeoclathratiforme BU-1, complete genomeTPR repeat-containing protein2e-1792.8
NC_013131:7889127:7901223790122379056294407Catenulispora acidiphila DSM 44928, complete genomeTetratricopeptide TPR_44e-1584.7
NC_010830:1038292:1038292103829210419303639Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-1483.6
NC_014033:395000:4039554039554072753321Prevotella ruminicola 23 chromosome, complete genomehypothetical protein6e-1481.3
NC_013947:460398:4685274685274715803054Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein1e-1380.1
NC_014315:2177277:2185590218559021881692580Nitrosococcus watsoni C-113 chromosome, complete genometetratricopeptide repeat-containing protein4e-1378.6
NC_010572:8493946:8495626849562684976021977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1173.2
NC_010572:33724:4832848328503041977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1173.2
NC_009921:6421387:6433394643339464345511158Frankia sp. EAN1pec, complete genomeTIR protein9e-1170.9
NC_009973:178000:2127392127392139171179Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completehypothetical protein9e-1170.5
NC_014318:5586287:5599486559948656006461161Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-1069.3
NC_005125:2366778:2384287238428723873163030Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-1069.3
NC_013440:811780:8253318253318290173687Haliangium ochraceum DSM 14365, complete genomeHI0933 family protein3e-1068.6
NC_016582:4983222:4994103499410349962472145Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein7e-1067.8
NC_008312:6617951:6633517663351766361052589Trichodesmium erythraeum IMS101, complete genomeprotein of unknown function DUF3232e-0966.6
NC_013161:1801904:1803292180329218053102019Cyanothece sp. PCC 8802, complete genomeNB-ARC domain protein3e-0965.5
NC_016582:10326938:103454851034548510346480996Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein6e-0964.7
NC_003272:4621554:4636981463698146391132133Nostoc sp. PCC 7120, complete genomehypothetical protein3e-0862.4
NC_009339:252174:2521742521742549302757Mycobacterium gilvum PYR-GCK plasmid pMFLV01, complete sequencehypothetical protein4e-0861.6
NC_013947:4413382:4426906442690644298572952Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, SARP family6e-0861.2
NC_009973:178000:2114062114062128151410Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeTPR repeat-containing protein7e-0861.2
NC_009077:2308634:2343123234312323458732751Mycobacterium sp. JLS, complete genomehypothetical protein2e-0759.7
NC_014355:1865003:1865003186500318681403138Candidatus Nitrospira defluvii, complete genomehypothetical protein2e-0759.7
NC_003888:8594500:859883085988308599405576Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0759.3
NC_013720:5769910:5816140581614058198143675Pirellula staleyi DSM 6068, complete genomehypothetical protein2e-0759.3
NC_006361:1547034:1557575155757515603552781Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-0759.3
NC_014815:6616500:6636414663641466383451932Micromonospora sp. L5 chromosome, complete genometpr repeat-containing protein2e-0656.6
NC_013757:729986:749063749063749767705Geodermatophilus obscurus DSM 43160, complete genometetratricopeptide TPR_44e-0655.5
NC_008312:5386630:5391012539101253949983987Trichodesmium erythraeum IMS101, complete genomepeptidase-like5e-0654.7