Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:1743890:1844722 Thermobifida fusca YX, complete genome

Start: 1844722, End: 1847634, Length: 2913

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:3117837:3128254312825431311512898Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated helicase Cas301186
NC_013131:4422000:4432703443270344373254623Catenulispora acidiphila DSM 44928, complete genomeCRISPR-associated protein, Cse1 family0894
NC_006361:4574536:4590706459070645934502745Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-170600
NC_019673:1988853:2042190204219020449372748Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas32e-166587
NC_007164:775000:7834007834007862522853Corynebacterium jeikeium K411, complete genomehypothetical protein1e-111405
NC_012590:977920:9836789836789864882811Corynebacterium aurimucosum ATCC 700975, complete genomeCRISPR-associated protein1e-109398
NC_015737:2146953:2151963215196321547312769Clostridium sp. SY8519, complete genomeputative helicase1e-107391
NC_018720:1812000:1820832182083218239993168Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated helicase Cas31e-100368
NC_008526:343445:3475193475193502872769Lactobacillus casei ATCC 334, complete genomeCRISPR-associated helicase1e-99365
NC_008278:514600:5190645190645218652802Frankia alni ACN14a, complete genomehypothetical protein; putative DEAD/DEAH box helicase domain2e-98360
NC_008054:745704:7546887546887574532766Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeCRISPR-associated helicase Cas33e-93343
NC_008529:735233:7468327468327495972766Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated helicase9e-93342
NC_014727:798191:8099868099868127512766Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated helicase cas32e-92341
NC_010610:795975:8050038050038077262724Lactobacillus fermentum IFO 3956, complete genomehypothetical protein1e-90335
NC_016109:603829:6205116205116233722862Kitasatospora setae KM-6054, complete genomeputative CRISPR-associated helicase2e-90334
NC_015389:481282:4862164862164893563141Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated helicase Cas34e-90333
NC_013524:1150725:1150725115072511535352811Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeCRISPR-associated helicase Cas32e-77291
NC_007775:723925:7396277396277423082682Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated helicase Cas32e-76288
NC_007356:1165760:1208782120878212114752694Dehalococcoides sp. CBDB1, complete genomeputative CRISPR-associated helicase Cas31e-68262
NC_013890:1175931:1184632118463211873102679Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated helicase Cas31e-68261
NC_014318:6395392:6449887644988764521662280Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated helicase Cas32e-56221
NC_017186:6395435:6449931644993164522102280Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated helicase Cas32e-56221
NC_008609:2518993:2531914253191425345532640Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated helicase Cas34e-56220
NC_021150:1677811:1699786169978617024912706Azotobacter vinelandii CA6, complete genomeCRISPR-associated helicase Cas3, core5e-54213
NC_012560:1677798:1699773169977317024782706Azotobacter vinelandii DJ, complete genomeCRISPR-associated helicase Cas3, core5e-54213
NC_013159:1422370:1428340142834014308382499Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated helicase Cas36e-53209
NC_015387:942974:9498269498269526002775Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated helicase Cas35e-52206
NC_015676:1663700:1675169167516916779222754Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated helicase Cas33e-49197
NC_015951:107360:1140161140161167872772Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated helicase Cas37e-46186
NC_015170:54000:5707057070599612892Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequenceCRISPR-associated helicase Cas38e-46186
NC_013850:985331:9897249897249924172694Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated helicase Cas35e-45183
NC_015436:1287873:1293817129381712964352619Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated helicase Cas31e-42175
NC_013851:759500:7688657688657714982634Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated helicase Cas33e-40167
NC_007333:1743890:1835906183590618387402835Thermobifida fusca YX, complete genomecRISPR-associated helicase Cas3, core3e-40167
NC_007643:185135:2063192063192090812763Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated helicase Cas3, core4e-39164
NC_014355:1461355:1466467146646714691962730Candidatus Nitrospira defluvii, complete genomeCRISPR-associated helicase Cas34e-37157
NC_010468:1029471:1036180103618010388462667Escherichia coli ATCC 8739, complete genomeCRISPR-associated helicase Cas37e-37156
NC_012912:1053618:1059035105903510616502616Dickeya zeae Ech1591, complete genomeCRISPR-associated helicase Cas34e-36154
NC_010473:2963951:2975117297511729777832667Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein, member of DEAD box family6e-36153
NC_000913:2873443:2882575288257528852412667Escherichia coli K12, complete genomeconserved protein, member of DEAD box family6e-36153
AC_000091:2872000:2883209288320928858752667Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein, member of DEAD box family6e-36153
NC_012759:2757826:2768387276838727710532667Escherichia coli BW2952 chromosome, complete genomehypothetical protein6e-36153
NC_002939:1505701:1512324151232415149752652Geobacter sulfurreducens PCA, complete genomeCRISPR-associated helicase Cas35e-36153
NC_009800:2889928:2901786290178629044522667Escherichia coli HS, complete genomeCRISPR-associated helicase Cas32e-35151
NC_002932:1851070:1868933186893318715182586Chlorobium tepidum TLS, complete genomehypothetical protein3e-35151
NC_002935:2292835:2302097230209723047272631Corynebacterium diphtheriae NCTC 13129, complete genomePutative helicase2e-29132
NC_015966:521703:5467875467875490452259Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeCRISPR-associated helicase Cas32e-26121
NC_016786:2235731:2246368224636822489982631Corynebacterium diphtheriae HC01 chromosome, complete genomeCRISPR-associated protein5e-26120
NC_016782:2235000:2245769224576922483992631Corynebacterium diphtheriae 241 chromosome, complete genomeCRISPR-associated protein5e-26120
NC_008340:1075500:1085465108546510880802616Alkalilimnicola ehrlichei MLHE-1, complete genomeCRISPR-associated helicase Cas33e-24114
NC_014210:1588426:158816415881641588436273Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-1379
NC_009953:2302337:230626623062662306832567Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein4e-1067.8