Pre_GI: BLASTP Hits

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Query: NC_007333:1743890:1831823 Thermobifida fusca YX, complete genome

Start: 1831823, End: 1832944, Length: 1122

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015951:107360:1101271101271113021176Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated protein, Cse4 family8e-78291
NC_013159:1422370:1432807143280714339131107Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated protein, Cse4 family4e-68258
NC_010610:795975:8114138114138124951083Lactobacillus fermentum IFO 3956, complete genomehypothetical protein2e-53209
NC_007164:775000:7798007798007809301131Corynebacterium jeikeium K411, complete genomehypothetical protein3e-53209
NC_019673:1988853:2038721203872120398601140Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated Cse4 family protein1e-52207
NC_015737:2146953:2157100215710021581611062Clostridium sp. SY8519, complete genomehypothetical protein3e-52206
NC_013131:4422000:4430839443083944320381200Catenulispora acidiphila DSM 44928, complete genomeCRISPR-associated protein, Cse4 family2e-52206
NC_014210:1588426:1590960159096015921471188Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,CRISPR-associated protein, Cse4 family2e-51202
NC_007333:1743890:1841234184123418424271194Thermobifida fusca YX, complete genomeCRISPR-associated CT1975 family protein4e-51202
NC_006361:4574536:4587266458726645884321167Nocardia farcinica IFM 10152, complete genomehypothetical protein9e-51201
NC_012590:977920:9890309890309901841155Corynebacterium aurimucosum ATCC 700975, complete genomeCRISPR-associated protein3e-49196
NC_008529:735233:7519697519697530451077Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated protein5e-49195
NC_008054:745704:7598257598257609011077Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein5e-49195
NC_014727:798191:8151238151238161991077Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated protein8e-49194
NC_008278:514600:5249005249005260421143Frankia alni ACN14a, complete genomehypothetical protein9e-49194
NC_018720:1812000:1817024181702418181601137Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated Cse4 family protein2e-48193
NC_007775:723925:7362167362167373581143Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated protein, Cse4 family6e-48191
NC_013510:3117837:3133461313346131346541194Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated protein, Cse4 family3e-47189
NC_015387:942974:9559569559569570771122Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated protein, Cse4 family1e-44180
NC_016109:603829:6167706167706179181149Kitasatospora setae KM-6054, complete genomeputative CRISPR-associated protein6e-44178
NC_015389:481282:4920244920244931571134Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated protein, Cse4 family1e-43177
NC_008526:343445:3525693525693536541086Lactobacillus casei ATCC 334, complete genomeCRISPR-associated protein2e-43176
NC_017186:6395435:6446317644631764474471131Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated protein CSE43e-43176
NC_014318:6395392:6446273644627364474031131Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated protein CSE43e-43176
NC_002939:1505701:1516947151694715180411095Geobacter sulfurreducens PCA, complete genomeCRISPR-associated CT1975 family protein2e-39163
NC_008609:2518993:2528761252876125298851125Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated protein, Cse4 family1e-38160
NC_015436:1287873:1299044129904413001171074Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein, Cse4 family2e-36153
NC_002932:1851070:1874340187434018753861047Chlorobium tepidum TLS, complete genomehypothetical protein6e-36151
NC_010468:1029471:1041257104125710423481092Escherichia coli ATCC 8739, complete genomeCRISPR-associated protein, Cse4 family1e-34147
AC_000091:2872000:2879707287970728807981092Escherichia coli W3110 DNA, complete genomehypothetical protein1e-34147
NC_000913:2873443:2879073287907328801641092Escherichia coli K12, complete genomehypothetical protein1e-34147
NC_010473:2963951:2971615297161529727061092Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-34147
NC_012759:2757826:2764885276488527659761092Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-34147
NC_015676:1663700:1671919167191916730371119Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated protein, Cse4 family3e-34146
NC_013850:985331:9951779951779962321056Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated protein, Cse4 family3e-34145
NC_009800:2889928:2898284289828428993751092Escherichia coli HS, complete genomeCRISPR-associated protein, Cse4 family6e-34145
NC_007643:185135:2026822026822037611080Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated CT1975 family protein1e-33144
NC_007356:1165760:1205359120535912066421284Dehalococcoides sp. CBDB1, complete genomehypothetical protein2e-33143
NC_013890:1175931:1181209118120911824921284Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated protein, Cse4 family2e-33143
NC_013851:759500:7653247653247665051182Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated protein, Cse4 family4e-32139
NC_012912:1053618:1055222105522210562561035Dickeya zeae Ech1591, complete genomeCRISPR-associated protein, Cse4 family2e-31137
NC_011894:5468500:5497150549715054981901041Methylobacterium nodulans ORS 2060, complete genomeCRISPR-associated protein, Cse4 family3e-31135
NC_002935:2292835:2297798229779822988561059Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein8e-27121
NC_016782:2235000:2241470224147022425281059Corynebacterium diphtheriae 241 chromosome, complete genomeCRISPR-associated protein8e-27121
NC_016786:2235731:2242069224206922431271059Corynebacterium diphtheriae HC01 chromosome, complete genomeCRISPR-associated protein8e-27121
NC_009342:795500:8068038068038078851083Corynebacterium glutamicum R chromosome, complete genomehypothetical protein2e-26119
NC_014355:1461355:1471338147133814725341197Candidatus Nitrospira defluvii, complete genomeCRISPR-associated protein Cse43e-26119
NC_008340:1075500:1082248108224810834051158Alkalilimnicola ehrlichei MLHE-1, complete genomeCRISPR-associated protein, Cse4 family6e-22105
NC_015170:54000:6373163731658742144Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence2e-0860.5