Pre_GI: BLASTP Hits

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Query: NC_006905:4638707:4666132 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 4666132, End: 4667043, Length: 912

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:474344747434474744358912Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-159560
NC_011205:4718239:474334147433414744252912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein7e-158556
NC_011080:4703266:472785447278544728765912Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein7e-158556
NC_010102:4745949:476399447639944764905912Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-157555
NC_011294:4560902:458601445860144586925912Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein9e-155546
NC_011147:4460726:449496244949624495873912Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-154544
NC_004631:4687270:470537547053754706286912Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-152538
NC_015761:4355335:437175543717554372666912Salmonella bongori NCTC 12419, complete genomehypothetical protein4e-129461
NC_011747:115864:119318119318120259942Escherichia coli S88 plasmid pECOS88, complete sequencehypothetical protein4e-1375.9
NC_009837:127000:133063133063134004942Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein4e-1375.9
NC_010334:2615260:263425226342522635220969Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein2e-1170.1