Pre_GI: BLASTP Hits

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Query: NC_006905:1961774:1982653 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 1982653, End: 1982994, Length: 342

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:1897611:190973319097331910179447Salmonella enterica subsp. enterica serovar Paratyphi C strainRac prophage; recombination and repair protein7e-39159
NC_016831:1734292:175921117592111760041831Salmonella enterica subsp. enterica serovar Gallinarum/pullorumphage recombination protein3e-33140
NC_011205:1345511:135360813536081354438831Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853recombination and repair protein RecT3e-33140
CP002185:1493280:150252315025231503332810Escherichia coli W, complete genomeRac prophage; recombination and repair protein4e-32136
NC_010473:1493983:150140415014041502213810Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage; recombination and repair protein4e-32136
CP002516:2580774:260251826025182603327810Escherichia coli KO11, complete genomeRecT protein4e-32136
NC_000913:1404000:141200814120081412817810Escherichia coli K12, complete genomeRac prophage; recombination and repair protein4e-32136
AC_000091:1407693:141569814156981416507810Escherichia coli W3110 DNA, complete genomerecombination and repair protein4e-32136
NC_011415:1472500:147741214774121478221810Escherichia coli SE11 chromosome, complete genomerecombination and repair protein RecT4e-32136
NC_012759:1296000:130406713040671304876810Escherichia coli BW2952 chromosome, complete genomerecombination and repair protein RecT4e-32136
NC_012947:2366000:238242123824212383230810Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completerecombination and repair protein RecT4e-32136
NC_012967:1403733:141115414111541411963810Escherichia coli B str. REL606 chromosome, complete genomerecombination and repair protein RecT4e-32136
NC_016902:2580774:260251826025182603327810Escherichia coli KO11FL chromosome, complete genomeRecT protein4e-32136
NC_002655:2142587:216290221629022163711810Escherichia coli O157:H7 EDL933, complete genomerecombinase, DNA renaturation protein encoded by prophage CP-933R1e-31135
NC_007712:1954808:1977354197735419783671014Sodalis glossinidius str. 'morsitans', complete genomephage recombinase9e-1992
NC_010645:406794:4071934071934082241032Bordetella avium 197N, complete genomephage recombination protein3e-1580.5
NC_010645:1496816:1498810149881014998411032Bordetella avium 197N, complete genomephage recombination protein3e-1580.5
NC_009256:1253384:1255713125571312567651053Burkholderia vietnamiensis G4 chromosome 1, complete sequenceRecT protein1e-1478.6
NC_009255:1344000:1347310134731013483621053Burkholderia vietnamiensis G4 chromosome 2, complete sequenceRecT protein1e-1478.6
NC_014915:2963500:299691029969102997755846Geobacillus sp. Y412MC52 chromosome, complete genomeRecT protein3e-1477.4
NC_013411:597235:606180606180607025846Geobacillus sp. Y412MC61, complete genomeRecT protein3e-1477.4
NC_006270:1415001:143041114304111431232822Bacillus licheniformis ATCC 14580, complete genomeDNA binding, phage related protein5e-1373.2
NC_006322:1415863:143127414312741432095822Bacillus licheniformis ATCC 14580, complete genomeYqaK5e-1373.2
NC_017208:694500:700832700832701638807Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA-binding phage-related protein9e-1372.4
NC_014831:8965:218752187522801927Thermaerobacter marianensis DSM 12885 chromosome, complete genomeRecT protein5e-1269.7
NC_020134:420500:426773426773427588816Clostridium stercorarium subsp. stercorarium DSM 8532, completeprotein RecT2e-1167.8
NC_012590:2117027:215253721525372153355819Corynebacterium aurimucosum ATCC 700975, complete genomeputative phage recombinase3e-1167.4
NC_016935:1636278:165086616508661651765900Paenibacillus mucilaginosus 3016 chromosome, complete genomeDNA-binding phage-related protein3e-1167.4
NC_016935:6464201:648503064850306485929900Paenibacillus mucilaginosus 3016 chromosome, complete genomeDNA-binding phage-related protein4e-1166.6
NC_016077:1278104:128970512897051290493789Acidaminococcus intestini RyC-MR95 chromosome, complete genomerecombination and repair protein recT4e-1166.6
NC_012658:2525931:253851825385182539402885Clostridium botulinum Ba4 str. 657 chromosome, complete genomeRecT7e-1165.9
NC_015437:1494777:151008915100891511000912Selenomonas sputigena ATCC 35185 chromosome, complete genomeRecT protein2e-1064.3
NC_008595:771753:7881987881987893101113Mycobacterium avium 104, complete genomeYqaK protein4e-0857