Pre_GI: BLASTP Hits

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Query: NC_006569:370846:376203 Silicibacter pomeroyi DSS-3 megaplasmid, complete sequence

Start: 376203, End: 377222, Length: 1020

Host Lineage: Ruegeria pomeroyi; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. Dimethylsulfoniopropionate-degrading bacterium. Ruegeria pomeroyi is capable of degrading the organic sulfur compound DMSP (dimethylsulfoniopropionate) and can metabolize a number of sulfur compounds. DMSP is synthesized by marine algae and the degradation product dimethylsulfide contributes to the global sulfur cycle.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007645:3688000:3688251368825136892671017Hahella chejuensis KCTC 2396, complete genomeTRAP-type mannitol/chloroaromatic compound transport system, periplasmic component4e-104377
NC_007963:2777066:2792565279256527936471083Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-61236
NC_019903:2578966:2578966257896625800991134Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component6e-24111
NC_018643:1309804:1333127133312713342871161Alpha proteobacterium HIMB5 chromosome, complete genomeBacterial ABC superfamily ATP binding cassette transporter, binding protein, family 72e-23110
NC_010506:4404377:4414103441410344151971095Shewanella woodyi ATCC 51908, complete genomeTRAP dicarboxylate transporter- DctP subunit1e-22107
NC_014153:2282725:2304953230495323060381086Thiomonas intermedia K12 chromosome, complete genomeExtracellular solute-binding protein, family 71e-21104
NC_014153:2282725:2306173230617323072551083Thiomonas intermedia K12 chromosome, complete genomeExtracellular solute-binding protein, family 75e-21102
NC_008820:2512518:2512518251251825136421125Prochlorococcus marinus str. MIT 9303, complete genomepossible Tripartite transporter component (TRAP-T family), substrate binding protein2e-20100
NC_013166:194614:1954691954691965841116Kangiella koreensis DSM 16069, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-20100
NC_015573:813000:8433328433328443841053Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomefamily 7 extracellular solute-binding protein2e-1893.2
NC_016944:514742:5193085193085203871080Vibrio cholerae IEC224 chromosome I, complete sequenceextracellular solute-binding protein5e-1892
NC_016445:2938887:2943453294345329445321080Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeputative extracellular solute-binding protein5e-1892
NC_012668:83641:99962999621010411080Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTRAP transporter solute receptor5e-1892
NC_002505:514732:5192985192985203771080Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeextracellular solute-binding protein, putative5e-1892
NC_014758:1387470:1408979140897914100461068Calditerrivibrio nitroreducens DSM 19672 chromosome, completeextracellular solute-binding protein, family 74e-1789.4
NC_015497:2859724:2874240287424028753161077Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeExtracellular solute-binding protein, family 75e-1789
NC_008312:6801445:6815319681531968164251107Trichodesmium erythraeum IMS101, complete genomeTRAP dicarboxylate transporter- DctP subunit5e-1788.6
NC_014011:472650:4898554898554909221068Aminobacterium colombiense DSM 12261 chromosome, complete genomeExtracellular solute-binding protein, family 73e-1686.3
NC_017192:88940:8894088940900041065Arcobacter sp. L, complete genomeTRAP dicarboxylate ABC transporter substrate binding component2e-1480.5
NC_007969:1076287:1077587107758710786391053Psychrobacter cryohalolentis K5, complete genomeTRAP dicarboxylate transporter- DctP subunit3e-1479.7
NC_009050:604950:627975627975628964990Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctP subunit9e-1477.8
NC_016593:762216:7896097896097906491041Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeTRAP dicarboxylate transporter subunit DctP1e-1377.8
NC_020210:661236:671267671267672223957Geobacillus sp. GHH01, complete genome2,3-diketo-L-gulonate-binding periplasmic protein1e-1377.4
NC_018581:759932:7701847701847713741191Gordonia sp. KTR9 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system, periplasmic component2e-1377
NC_008312:6801445:6816642681664268177271086Trichodesmium erythraeum IMS101, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-1376.6
NC_014206:1618988:1621954162195416230121059Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-1273.9
NC_006510:1995916:2015861201586120168891029Geobacillus kaustophilus HTA426, complete genomeC4-dicarboxylate transport system (C4-dicarboxylate-binding protein)2e-1273.9
NC_007963:317291:3172913172913183551065Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-1273.9
NC_015565:1511426:1528392152839215294141023Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeTRAP dicarboxylate transporter subunit DctP2e-1273.6
NC_016048:3856665:3866163386616338672241062Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter3e-1273.2
NC_016745:546249:555875555875556750876Oceanimonas sp. GK1 chromosome, complete genomeTRAP transporter DctP family protein4e-1272.4
NC_016629:3789554:3828241382824138292871047Desulfovibrio africanus str. Walvis Bay chromosome, completeextracellular solute-binding protein5e-1272
NC_015519:1888917:1890773189077318917981026Tepidanaerobacter sp. Re1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-1170.9
NC_007644:416000:4256164256164266231008Moorella thermoacetica ATCC 39073, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-1170.5
NC_014966:1668822:169116016911601692143984Vibrio vulnificus MO6-24/O chromosome II, complete sequenceTRAP-type C4-dicarboxylate transporter periplasmic protein3e-1169.7
NC_015589:2447132:2452948245294824539821035Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeTRAP dicarboxylate transporter DctP subunit3e-1169.7
NC_016641:2815974:2835933283593328369671035Paenibacillus terrae HPL-003 chromosome, complete genomeputative C4-dicarboxylate ABC transporter substrate binding protein4e-1169.3
NC_012491:1293086:1294546129454612955951050Brevibacillus brevis NBRC 100599, complete genomeprobable C4-dicarboxylate ABC transporter substrate binding protein4e-1169.3
NC_011661:1807101:180894618089461809941996Dictyoglomus turgidum DSM 6724, complete genomeTRAP dicarboxylate transporter- DctP subunit3e-1066.2
NC_009832:110239:1319071319071329201014Serratia proteamaculans 568, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-1065.9
NC_014206:1618988:1618988161898816200161029Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP5e-1065.5
NC_017187:325229:340255340255341247993Arcobacter butzleri ED-1, complete genomeC4-dicarboxylate-binding periplasmic protein1e-0964.3
NC_006582:4256915:425691542569154257904990Bacillus clausii KSM-K16, complete genomeC4-dicarboxylate transport system substrate-binding protein1e-0964.3
NC_015914:2230076:225379622537962254788993Cyclobacterium marinum DSM 745 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP2e-0963.9
NC_020911:3046916:306024730602473061245999Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP2e-0963.5
NC_009439:4404942:4427124442712444281251002Pseudomonas mendocina ymp, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-0962.8
NC_009997:3483157:3500296350029635013151020Shewanella baltica OS195, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-0962.4
NC_016901:3430401:3447508344750834485271020Shewanella baltica OS678 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP4e-0962.4
NC_007509:1043602:104900310490031049989987Burkholderia sp. 383 chromosome 3, complete sequenceTRAP dicarboxylate transporter- DctP subunit6e-0962
NC_021066:3028421:3048132304813230491691038Raoultella ornithinolytica B6, complete genomehypothetical protein8e-0961.6
NC_020908:1920169:193008319300831931063981Octadecabacter arcticus 238, complete genomeTRAP transporter DctP subunit8e-0961.6
NC_020302:3014483:303342130334213034347927Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein1e-0860.8
NC_010506:2146444:2155767215576721568461080Shewanella woodyi ATCC 51908, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-0860.5
NC_020911:18500:362213622137201981Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP3e-0859.7
NC_016943:4194002:4201214420121442022901077Blastococcus saxobsidens DD2, complete genomeTRAP-type C4-dicarboxylate transport system, Extracellular solute-binding protein5e-0858.9
NC_009454:1389974:1396060139606013970881029Pelotomaculum thermopropionicum SI, complete genomeTRAP-type C4-dicarboxylate transport system, periplasmic component6e-0858.5
NC_008596:3404832:3424110342411034252101101Mycobacterium smegmatis str. MC2 155, complete genomebacterial extracellular solute-binding protein, family protein 78e-0858.2
NC_008043:86470:1051911051911062371047Silicibacter sp. TM1040 mega plasmid, complete sequenceTRAP dicarboxylate transporter- DctP subunit8e-0858.2
NC_004463:2344128:2344128234412823451951068Bradyrhizobium japonicum USDA 110, complete genomeprobable ABC transporter substrate-binding protein1e-0757.8
NC_017249:7917586:7936988793698879380131026Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-0757.8
NC_007503:1111457:1159123115912311601901068Carboxydothermus hydrogenoformans Z-2901, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-0757.4
NC_014323:4355266:4372829437282943738631035Herbaspirillum seropedicae SmR1 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system periplasmic protein1e-0757.4
NC_008392:666000:683207683207684193987Burkholderia cepacia AMMD chromosome 3, complete sequenceTRAP dicarboxylate transporter, DctP subunit2e-0757.4
NC_019978:2532640:2546495254649525475501056Halobacteroides halobius DSM 5150, complete genometripartite ATP-independent periplasmic transporter solute receptor, DctP family2e-0757
NC_003911:1791878:1839928183992818409501023Silicibacter pomeroyi DSS-3, complete genomeTRAP dicarboxylate transporter, DctP subunit, putative2e-0757
NC_009778:4188000:422889942288994229882984Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-0756.6
NC_010511:1351000:1355534135553413565561023Methylobacterium sp. 4-46 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-0756.2
NC_016048:308342:3402363402363412941059Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter3e-0756.2
NC_014532:2989185:300087330008733001859987Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein3e-0652.8
NC_018691:198909:2166332166332177541122Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein4e-0652.8
NC_013855:558831:5737265737265747661041Azospirillum sp. B510 plasmid pAB510a, complete sequenceTRAP dicarboxylate transporter4e-0652.8
NC_004193:3530000:3539179353917935402011023Oceanobacillus iheyensis HTE831, complete genomeC4-dicarboxylate transport system C4-dicarboxylate-binding protein4e-0652.4
NC_014532:2268078:2268078226807822692171140Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein5e-0652.4