Pre_GI: BLASTP Hits

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Query: NC_006511:1063249:1067191 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1067191, End: 1067565, Length: 375

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1057259:106120110612011061575375Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-54209
NC_011080:1944226:197516319751631975537375Salmonella enterica subsp. enterica serovar Newport str. SL254,copper resistance protein CopC2e-53207
NC_010102:1137247:114118911411891141563375Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-53207
NC_003197:1945858:196954219695421969916375Salmonella typhimurium LT2, complete genomeputative copper resistance protein2e-53207
NC_011094:1923870:194810319481031948477375Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-53207
NC_016856:1957263:198094719809471981321375Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-53207
NC_016860:1943203:196508319650831965457375Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-53207
NC_016863:1905454:192913819291381929512375Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-53207
NC_011205:1345511:134945313494531349827375Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-53207
NC_011294:1220526:122446212244621224842381Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-53207
NC_012125:1897611:190154519015451901925381Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-53207
NC_016810:1903426:192711019271101927490381Salmonella enterica subsp. enterica serovar Typhimurium strputative cation resistance protein1e-53207
NC_016857:1903426:192711019271101927490381Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein1e-53207
NC_017046:1902788:192647319264731926853381Salmonella enterica subsp. enterica serovar Typhimurium str. 798cation resistance protein1e-53207
NC_011083:1993672:201856320185632018937375Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,copper resistance protein CopC9e-53205
NC_008258:1873805:188908818890881889462375Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-43173
NC_013850:1887556:189148518914851891859375Klebsiella variicola At-22 chromosome, complete genomecopper resistance protein CopC4e-29126
NC_015566:2039431:204560720456072045990384Serratia sp. AS12 chromosome, complete genomecopper resistance protein CopC4e-27119
NC_015567:2039443:204561920456192046002384Serratia sp. AS9 chromosome, complete genomecopper resistance protein CopC4e-27119
NC_010159:1668795:167639316763931676779387Yersinia pestis Angola, complete genomecopper resistance protein CopC1e-26118
NC_010634:2004653:201292620129262013312387Yersinia pseudotuberculosis PB1/+, complete genomecopper resistance protein CopC1e-26118
NC_015061:3111211:313078431307843131167384Rahnella sp. Y9602 chromosome, complete genomecopper resistance protein CopC5e-24109
NC_016818:3114460:313135231313523131735384Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completecopper resistance protein CopC-like protein6e-24109
NC_016816:2073677:207678520767852077159375Pantoea ananatis LMG 5342, complete genomecopper resistance protein CopC5e-22102
NC_012912:2553391:256453625645362564916381Dickeya zeae Ech1591, complete genomecopper resistance protein CopC8e-1889
NC_011894:6708970:672760667276066727965360Methylobacterium nodulans ORS 2060, complete genomecopper resistance protein CopC7e-1579.3
NC_010678:900389:932054932054932422369Ralstonia pickettii 12J chromosome 2, complete sequencecopper resistance protein CopC9e-1475.5
NC_015186:2884866:289270228927022893070369Acidiphilium multivorum AIU301, complete genomeputative copper resistance protein2e-1374.3
NC_016589:2824164:285857028585702858944375Burkholderia sp. YI23 chromosome 1, complete sequencecopper resistance protein CopC1e-1168.6
CU928145:3958572:397205939720593972439381Escherichia coli 55989 chromosome, complete genomeCopper resistance protein C precursor1e-1168.6
NC_009778:4188000:421772842177284218108381Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1168.6
NC_011748:3958572:397205939720593972439381Escherichia coli 55989, complete genomeCopper resistance protein C precursor1e-1168.6
NC_004757:2213806:223664322366432237065423Nitrosomonas europaea ATCC 19718, complete genomeputative similar to copper export proteins7e-0959.3
NC_008344:2434344:244002124400212440452432Nitrosomonas eutropha C91, complete genomecopper resistance protein CopC8e-0959.3
NC_008726:3947917:394904739490473949727681Mycobacterium vanbaalenii PYR-1, complete genomecopper resistance protein CopC1e-0858.5
NC_015690:7518732:7536776753677675384341659Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYcnJ3e-0857
NC_010682:1913941:192766019276601928046387Ralstonia pickettii 12J chromosome 1, complete sequencecopper resistance protein CopC6e-0856.2
NC_009659:1923925:195478119547811955158378Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance signal peptide protein C9e-0855.8
NC_009138:1518315:153877615387761539153378Herminiimonas arsenicoxydans, complete genomeCopper resistance protein C precursor CopC1e-0755.1
NC_010170:4800000:484576348457634846149387Bordetella petrii, complete genomeCopper resistance protein C precursor.5e-0753.1
NC_009338:2925286:296426129642612964950690Mycobacterium gilvum PYR-GCK chromosome, complete genomecopper resistance protein CopC7e-0752.8
NC_009659:892272:897603897603897989387Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance signal peptide protein C7e-0752.8
NC_007492:4310828:431348043134804313854375Pseudomonas fluorescens PfO-1, complete genomeCopper resistance protein CopC6e-0752.8
NC_014640:1179382:119630811963081196694387Achromobacter xylosoxidans A8 chromosome, complete genomecopper resistance protein C1e-0652.4
NC_019962:1909103:1947190194719019491781989Natrinema pellirubrum DSM 15624, complete genomeputative copper export protein1e-0652
NC_011206:2239109:225020522502052250579375Acidithiobacillus ferrooxidans ATCC 53993, complete genomecopper resistance protein CopC2e-0650.8
NC_015572:319725:324681324681325052372Methylomonas methanica MC09 chromosome, complete genomecopper resistance protein CopC3e-0650.4
NC_016147:586433:595473595473595856384Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative copper resistance protein4e-0650.4