Pre_GI: BLASTP Hits

Some Help

Query: NC_005363:3562205:3576704 Bdellovibrio bacteriovorus HD100, complete genome

Start: 3576704, End: 3577957, Length: 1254

Host Lineage: Bdellovibrio bacteriovorus; Bdellovibrio; Bdellovibrionaceae; Bdellovibrionales; Proteobacteria; Bacteria

General Information: This organism is unique in that it is a bacteriolytic microbe that preys on other gram negative bacteria. It is found throughout soil, sewage, and aquatic environments, and is often associated with biofilms. This organism has a biphasic lifestyle which consists of a free living and motile phase, and an attack phase where the bacterium attaches to a host cell, burrows into the periplasm, and begins to degrade the host from the inside out. The organism sheds its flagellum once it makes irreversible contact with the host, and when it is inside, begins to form a bdelloplast, resulting in degradation of the host cell inner membrane and alteration of its peptidoglycan layer, resulting in a spherical cell. The Bdellovibrio cell elongates until it forms a long coiled structure which then divides, forming many flagellated progeny which continue the degradation of the host cell to propagate the life cycle. The genome encodes a large number of degradative and lytic enzymes which are used to degrade the host organism. The organism has numerous deficiencies in its amino acid biosynthetic pathways, suggesting it utilizes prey metabolites for protein synthesis.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012108:2194251:2194251219425121955311281Desulfobacterium autotrophicum HRM2, complete genomeHsdS22e-32140
NC_010364:84900:9158891588930151428Halobacterium salinarum R1, complete genometype I site-specific deoxyribonuclease subunit rmeS2e-32140
NC_002607:81452:8916089160905871428Halobacterium sp. NRC-1, complete genomeRmeS2e-32140
NC_011283:5011497:5019495501949550208621368Klebsiella pneumoniae 342 chromosome, complete genometype I restriction modification DNA specificity domain protein2e-30133
NC_016620:781995:7957407957407969781239Bacteriovorax marinus SJ, complete genomeputative type I restriction enzyme specificity protein5e-28125
NC_009943:940835:9510329510329527651734Candidatus Desulfococcus oleovorans Hxd3, complete genomerestriction modification system DNA specificity domain7e-22105
NC_016047:2480921:2491021249102124922981278Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetype I restriction-modification enzyme, S subunit8e-2098.6
NC_008705:27434:3457634576358111236Mycobacterium sp. KMS, complete genometype I restriction-modification system specificity subunit1e-1997.8
NC_008146:20047:2866128661298961236Mycobacterium sp. MCS, complete genometype I restriction-modification system specificity subunit1e-1997.8
NC_011666:1661491:1673298167329816746171320Methylocella silvestris BL2, complete genometype I restriction enzyme3e-1996.7
NC_014008:1463795:1483479148347914848221344Coraliomargarita akajimensis DSM 45221 chromosome, complete genomerestriction modification system DNA specificity domain protein3e-1996.3
NC_020541:2551539:2562003256200325637091707Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit2e-1893.6
NC_004347:4441110:4439626443962644411131488Shewanella oneidensis MR-1, complete genometype I restriction-modification system, S subunit4e-1892.8
NC_018876:587094:6087896087896100811293Methanolobus psychrophilus R15 chromosome, complete genometype I restriction-modification system, S subunit6e-1892.4
NC_017161:1:1655416554178341281Hydrogenobacter thermophilus TK-6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-1791.7
NC_013799:1:1649316493177731281Hydrogenobacter thermophilus TK-6, complete genomerestriction endonuclease S subunit1e-1791.7
NC_002947:5386489:5396987539698753987171731Pseudomonas putida KT2440, complete genometype I restriction-modification system, S subunit2e-1790.5
NC_015562:755785:7636407636407649591320Methanotorris igneus Kol 5 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1790.5
NC_015663:2090442:2112256211225621135961341Enterobacter aerogenes KCTC 2190 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-1790.1
NC_004369:256262:2803292803292815581230Corynebacterium efficiens YS-314, complete genomeputative restriction enzyme subunit S4e-1686.3
NC_015320:1690047:1699124169912417003861263Archaeoglobus veneficus SNP6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-1685.9
NC_013862:27991:4442444258031362Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequencerestriction modification system DNA specificity domain protein1e-1584.7
NC_010003:1126800:1142463114246311437521290Petrotoga mobilis SJ95, complete genomerestriction modification system DNA specificity domain2e-1584.3
NC_013161:4093322:4102957410295741043271371Cyanothece sp. PCC 8802, complete genomerestriction modification system DNA specificity domain protein3e-1583.6
NC_016026:1224129:1234454123445412357431290Micavibrio aeruginosavorus ARL-13 chromosome, complete genometype I restriction modification DNA specificity domain-containing protein3e-1583.2
NC_009033:755226:7610247610247624151392Staphylothermus marinus F1, complete genomerestriction modification system DNA specificity domain4e-1582.8
NC_012881:1802000:1822804182280418240061203Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein5e-1582.4
NC_013592:446092:4545344545344557241191Dickeya dadantii Ech586, complete genomerestriction modification system DNA specificity domain protein5e-1479.3
NC_015865:229883:2407132407132420051293Thermococcus sp. 4557 chromosome, complete genomerestriction modification system DNA specificity subunit1e-1377.8
NC_016051:1005188:1012531101253110138171287Thermococcus sp. AM4 chromosome, complete genomeType I restriction-modification system specificity subunit S3e-1376.6
NC_003901:2727361:2735284273528427365041221Methanosarcina mazei Go1, complete genometype I restriction-modification system specificity subunit4e-1376.3
NC_008786:3915000:392474739247473925637891Verminephrobacter eiseniae EF01-2, complete genomerestriction modification system DNA specificity domain4e-1376.3
NC_008740:257434:2748562748562762411386Marinobacter aquaeolei VT8, complete genomerestriction modification system DNA specificity domain8e-1375.5
NC_014002:1061501:1071126107112610723701245Methanohalophilus mahii DSM 5219 chromosome, complete genomerestriction modification system DNA specificity domain protein5e-1272.4
NC_009439:608500:6145236145236157701248Pseudomonas mendocina ymp, complete genomerestriction modification system DNA specificity subunit6e-1272.4
NC_012778:1573847:1588985158898515902351251Eubacterium eligens ATCC 27750, complete genometype I restriction enzyme2e-1170.5
NC_019771:3237000:3256940325694032582681329Anabaena cylindrica PCC 7122, complete genomerestriction modification system DNA specificity domain protein5e-1169.3
NC_009665:2602000:2614480261448026157631284Shewanella baltica OS185 chromosome, complete genomerestriction modification system DNA specificity subunit7e-1168.9
NC_015557:90503:9750697506988251320Hydrogenobaculum sp. 3684 chromosome, complete genomerestriction modification system DNA specificity domain protein2e-1067.8
NC_020411:90538:9754197541988601320Hydrogenobaculum sp. HO, complete genomerestriction modification system DNA specificity domain containing protein2e-1067.8
NC_015587:90539:9754297542988611320Hydrogenobaculum sp. SHO chromosome, complete genomerestriction modification system DNA specificity domain protein2e-1067.8
NC_018876:2151226:2161350216135021625671218Methanolobus psychrophilus R15 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1067.4
NC_009328:814530:8393888393888409171530Geobacillus thermodenitrificans NG80-2 chromosome, complete genometype I specificity subunit HsdS3e-1066.6
NC_013440:3813132:3832106383210638333771272Haliangium ochraceum DSM 14365, complete genomerestriction modification system DNA specificity domain protein5e-1065.9
NC_006672:47610:6642766427676351209Gluconobacter oxydans 621H plasmid pGOX1, complete sequenceType I restriction-modification enzyme S subunit6e-1065.9
NC_011901:1860887:1891507189150718927661260Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype I restriction-modification system specificity subunit1e-0965.1
NC_015161:1556766:1592163159216315933531191Deinococcus proteolyticus MRP chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-0964.7
NC_009656:44500:8547085470868641395Pseudomonas aeruginosa PA7 chromosome, complete genometype I restriction-modification system subunit S1e-0964.7
NC_010163:614634:6229006229006241591260Acholeplasma laidlawii PG-8A chromosome, complete genometype I site-specific restriction-modification system, S (specificity) subunit3e-0963.5
NC_007413:1405817:1418019141801914193831365Anabaena variabilis ATCC 29413, complete genomeRestriction modification system DNA specificity domain3e-0963.2
NC_014220:1162948:1167996116799611692641269Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomerestriction modification system DNA specificity domain protein6e-0962.4
NC_011726:3051408:307105630710563071772717Cyanothece sp. PCC 8801, complete genomerestriction modification system DNA specificity domain protein6e-0962.4
NC_019904:5308998:531281753128175313734918Echinicola vietnamensis DSM 17526 chromosome, complete genomerestriction endonuclease S subunit1e-0861.6
NC_016816:3952000:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S1e-0861.2
NC_016816:3974895:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S1e-0861.2
NC_012793:1718000:1721130172113017224161287Geobacillus sp. WCH70, complete genomerestriction modification system DNA specificity domain protein2e-0860.8
NC_014323:5219154:5228943522894352302081266Herbaspirillum seropedicae SmR1 chromosome, complete genomeType I site-specific deoxyribonuclease specificity subunit2e-0860.5
NC_016803:2431672:2450504245050424517211218Desulfovibrio desulfuricans ND132 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-0859.7
NC_008278:5399715:5418092541809254194231332Frankia alni ACN14a, complete genomeType I restriction-modification system, S subunit4e-0859.7
NC_012669:1700626:1710630171063017119131284Beutenbergia cavernae DSM 12333, complete genomerestriction modification system DNA specificity domain protein5e-0859.3
NC_009076:75535:915959159592542948Burkholderia pseudomallei 1106a chromosome I, complete sequenceRestriction endonuclease S subunits5e-0859.3
NC_012968:239476:2505692505692517621194Methylotenera mobilis JLW8, complete genomerestriction modification system DNA specificity domain protein5e-0859.3
NC_015138:1:1042110421117371317Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completerestriction modification system DNA specificity domain-containing protein6e-0858.9
NC_004463:5540924:5557859555785955591601302Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein6e-0858.9
NC_016002:1048420:1074827107482710761731347Pseudogulbenkiania sp. NH8B, complete genometype I restriction-modification system specificity subunit7e-0858.9
NC_004603:370320:3874733874733892241752Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative HsdS polypeptide, part of CfrA family8e-0858.5
NC_014965:997344:1006320100632010080921773Vibrio vulnificus MO6-24/O chromosome I, complete sequencetype I restriction-modification system, DNA-methyltransferase subunit M8e-0858.5
NC_014550:2562053:2590617259061725918701254Arthrobacter arilaitensis Re117, complete genometype I restriction-modification system specificity subunit1e-0758.2
NC_003272:3275413:3277624327762432789071284Nostoc sp. PCC 7120, complete genometype I restriction-modification enzyme S subunit1e-0757.8
NC_015565:287900:2995902995903010021413Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completerestriction modification system DNA specificity domain-containing protein2e-0757.8
NC_016816:1137904:1156994115699411586911698Pantoea ananatis LMG 5342, complete genometype I restriction modification DNA specificity domain protein2e-0757.8
NC_016023:1923170:1932204193220419333851182Bacillus coagulans 36D1 chromosome, complete genomerestriction modification system DNA specificity subunit2e-0757.4
NC_015216:1102837:1118283111828311194941212Methanobacterium sp. AL-21 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0757
NC_014618:690056:7105557105557117391185Enterobacter cloacae SCF1 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-0756.6
NC_011831:2213306:2212048221204822133191272Chloroflexus aggregans DSM 9485, complete genomerestriction modification system DNA specificity domain protein4e-0756.6
NC_015696:285456:2951282951282962971170Francisella sp. TX077308 chromosome, complete genometype I restriction-modification system, specificity subunit S4e-0756.2
NC_014974:758129:7645347645347655921059Thermus scotoductus SA-01 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-0756.2
NC_014206:411143:4175314175314187451215Geobacillus sp. C56-T3 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-0755.5
NC_016593:416661:4224874224874236651179Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein7e-0755.5
NC_008312:3728329:3735023373502337362311209Trichodesmium erythraeum IMS101, complete genomerestriction modification system DNA specificity domain7e-0755.5
NC_012914:5446366:5451995545199554533651371Paenibacillus sp. JDR-2, complete genomerestriction modification system DNA specificity domain protein7e-0755.5
NC_018604:2579000:2603755260375526049511197Brachyspira pilosicoli WesB complete genometype I restriction-modification enzyme S subunit9e-0755.1
NC_014973:3414459:3431795343179534330301236Geobacter sp. M18 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein9e-0755.1
NC_015703:3880903:3901289390128939026681380Runella slithyformis DSM 19594 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-0654.7
NC_010994:859500:8739068739068751801275Rhizobium etli CIAT 652, complete genomeprobable type I restriction-modification system protein, specificity subunit2e-0654.3
NC_009925:647752:6642866642866654341149Acaryochloris marina MBIC11017, complete genometype I restriction-modification enzyme S subunit2e-0653.9
NC_013967:2103968:2130371213037121316031233Haloferax volcanii DS2 chromosome, complete genometype I restriction-modification system specificity subunit2e-0653.9
NC_002953:15416:3758837588388981311Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative type I restriction enzyme specificity protein2e-0653.5
NC_019902:1863162:1874009187400918753281320Thioalkalivibrio nitratireducens DSM 14787, complete genomeType I restriction-modification system, specificity subunit S4e-0653.1
NC_008346:2579756:2600348260034826015891242Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRestriction endonuclease S subunits-like protein5e-0652.8
NC_003902:555699:5640055640055652971293Xanthomonas campestris pv. campestris str. ATCC 33913, completeputative restriction modification system specificity subunit6e-0652.4
NC_007086:557789:5660955660955673871293Xanthomonas campestris pv. campestris str. 8004, complete genomeputative restriction modification system specificity subunit6e-0652.4
NC_007575:973559:9842349842349854961263Sulfurimonas denitrificans DSM 1251, complete genomerestriction modification system DNA specificity subunit7e-0652.4
NC_016629:3789554:3799536379953638008641329Desulfovibrio africanus str. Walvis Bay chromosome, completerestriction modification system DNA specificity domain-containing protein7e-0652
NC_015634:2595500:2612515261251526136931179Bacillus coagulans 2-6 chromosome, complete genomehypothetical protein8e-0652