Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:608500 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6085616104291869acyl-CoA dehydrogenase domain-containing proteinQuickGO ontologyBLASTP
61048661162211372-nitropropane dioxygenase NPDQuickGO ontologyBLASTP
6118046145302727type I restriction-modification system M subunitQuickGO ontologyBLASTP
6145236157701248restriction modification system DNA specificity subunitQuickGO ontologyBLASTP
615763616416654hypothetical proteinBLASTP
6164136174951083appr-1-p processing domain-containing proteinQuickGO ontologyBLASTP
6175046207673264HsdR family type I site-specific deoxyribonucleaseQuickGO ontologyBLASTP
620768621475708hypothetical proteinBLASTP
621578622426849hypothetical proteinBLASTP
6225036237561254metal dependent phosphohydrolaseQuickGO ontologyBLASTP
623840623974135hypothetical protein
624048624707660peptide methionine sulfoxide reductaseQuickGO ontologyBLASTP
6247596274822724diguanylate cyclasephosphodiesterase with PASPAC and GAF sensorsQuickGO ontologyBLASTP
627618628151534hypothetical protein
6283046302741971dihydrolipoamide acetyltransferaseQuickGO ontologyBLASTP