Pre_GI: BLASTP Hits

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Query: NC_005244:37546:41338 Pseudomonas sp. ND6 plasmid pND6-1, complete sequence

Start: 41338, End: 41625, Length: 288

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. These bacteria share a high degree of homology to Pseudomonas aeruginosa strains. However, key virulence factors like certain exotoxin genes and type III secretion systems are absent, which makes these bacteria non-pathogenic in nature. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:1188500:1218671121867112196781008Pseudomonas fulva 12-X chromosome, complete genomeNucleoid-associated protein ndpA1e-44177
NC_005773:1333863:1344087134408713450881002Pseudomonas syringae pv. phaseolicola 1448A, complete genomenucleoid-associated protein NdpA1e-43174
NC_004129:5373886:5384686538468653858011116Pseudomonas fluorescens Pf-5, complete genomenucleoid-associated protein NdpA5e-39159
NC_008463:5246954:5259130525913052601461017Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein6e-39159
NC_009656:4527457:4583766458376645847881023Pseudomonas aeruginosa PA7 chromosome, complete genomenucleoid-associated protein NdpA6e-39159
NC_018080:5091772:5104886510488651059081023Pseudomonas aeruginosa DK2 chromosome, complete genomenucleoid-associated protein NdpA6e-38155
NC_008322:2716676:2716676271667627177041029Shewanella sp. MR-7, complete genome37kDa nucleoid-associated protein2e-1271.2
NC_013971:2408522:2411717241171724127211005Erwinia amylovora ATCC 49946 chromosome, complete genomenucleoid-associated protein3e-1270.9
NC_013961:2370994:2374189237418923751931005Erwinia amylovora, complete genomeNucleoid-associated protein ndpA3e-1270.9
NC_014618:1593360:1607541160754116085451005Enterobacter cloacae SCF1 chromosome, complete genome37kDa nucleoid-associated protein3e-1270.5
NC_011663:2123388:2142618214261821436461029Shewanella baltica OS223 chromosome, complete genomenucleoid-associated protein NdpA4e-1270.1
NC_020064:3157656:3160926316092631619331008Serratia marcescens FGI94, complete genomenucleoid-associated protein4e-1270.1
NC_012912:2800884:2800884280088428018941011Dickeya zeae Ech1591, complete genome37kDa nucleoid-associated protein5e-1269.7
NC_015566:3622385:3624674362467436256841011Serratia sp. AS12 chromosome, complete genomenucleoid-associated protein ndpA8e-1268.9
NC_009092:1684467:1697585169758516986161032Shewanella loihica PV-4, complete genome37 kDa nucleoid-associated protein8e-1268.9
NC_006511:682863:7026397026397036461008Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnucleoid-associated protein NdpA1e-1168.6
NC_010102:683444:7173287173287183351008Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1168.6
NC_003197:2327474:2327474232747423284811008Salmonella typhimurium LT2, complete genomenucleoid-associated protein NdpA1e-1168.6
NC_011083:2375061:2375061237506123760681008Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,nucleoid-associated protein NdpA1e-1168.6
NC_010067:660659:6786796786796796861008Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1168.6
NC_004631:685357:7098467098467108531008Salmonella enterica subsp. enterica serovar Typhi Ty2, completenucleoid-associated protein NdpA1e-1168.6
NC_011147:682897:7025857025857035921008Salmonella enterica subsp. enterica serovar Paratyphi A strnucleoid-associated protein NdpA1e-1168.6
NC_016810:2325190:2325190232519023261971008Salmonella enterica subsp. enterica serovar Typhimurium strnucleoid-asociated protein1e-1168.6
NC_016856:2379027:2379027237902723800341008Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Snucleoid-associated protein NdpA1e-1168.6
NC_016857:2325190:2325190232519023261971008Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74nucleoid-associated protein NdpA1e-1168.6
NC_016860:2323017:2323017232301723240241008Salmonella enterica subsp. enterica serovar Typhimurium strnucleoid-associated protein NdpA1e-1168.6
NC_016863:2324293:2327219232721923282261008Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1nucleoid-associated protein NdpA1e-1168.6
NC_017046:2324554:2324554232455423255611008Salmonella enterica subsp. enterica serovar Typhimurium str. 798nucleoid-asociated protein1e-1168.6
NC_016816:1545354:1575332157533215763361005Pantoea ananatis LMG 5342, complete genome37 kDa nucleoid-associated protein3e-1167
NC_016831:687549:7117377117377127441008Salmonella enterica subsp. enterica serovar Gallinarum/pullorumnucleoid-asociated protein3e-1167
NC_004603:2235142:223654022365402237538999Vibrio parahaemolyticus RIMD 2210633 chromosome I, completenucleoid-associated protein NdpA1e-1065.1
NC_012917:1840172:1882018188201818830251008Pectobacterium carotovorum subsp. carotovorum PC1, complete genome37kDa nucleoid-associated protein3e-1063.9
NC_014965:2200974:220097422009742201912939Vibrio vulnificus MO6-24/O chromosome I, complete sequencenucleoid-associated protein NdpA3e-1063.5
NC_005140:960261:969265969265970263999Vibrio vulnificus YJ016 chromosome II, complete sequencenucleoid-associated protein NdpA2e-0961.2