Pre_GI: BLASTP Hits

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Query: NC_005126:949226:962865 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 962865, End: 964034, Length: 1170

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:869295:8772988772988784551158Photorhabdus asymbiotica, complete genomeampc-type class c beta-lactamase0725
NC_008596:4043213:4046936404693640480781143Mycobacterium smegmatis str. MC2 155, complete genomebeta-lactamase3e-98358
NC_009832:2460027:2474186247418624753221137Serratia proteamaculans 568, complete genomebeta-lactamase2e-94346
NC_009140:60806:6881768817700461230Salmonella enterica enterica sv Newport str. SL254, completebeta-lactamase1e-93343
NC_009140:60806:7228372283735121230Salmonella enterica enterica sv Newport str. SL254, completebeta-lactamase1e-93343
NC_020064:2728569:2735384273538427365171134Serratia marcescens FGI94, complete genomepenicillin-binding protein, beta-lactamase class C5e-93341
NC_015224:2095816:2111842211184221130081167Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,beta-lactamase7e-84311
NC_007494:867901:8745598745598757011143Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative beta-lactamase precursor3e-77288
NC_011958:923789:9295469295469307691224Rhodobacter sphaeroides KD131 chromosome 2, complete genomebeta-lactamase2e-75283
NC_012491:1293086:1319612131961213216001989Brevibacillus brevis NBRC 100599, complete genomehypothetical protein4e-1479.3
NC_014931:3642779:3648036364803636497391704Variovorax paradoxus EPS chromosome, complete genomebeta-lactamase7e-1478.6
NC_014032:338547:3649483649483661081161Salinibacter ruber M8 chromosome, complete genomebeta-lactamase7e-1478.6
UCMB5137:174593:2016412016412036502010Bacillus atrophaeus UCMB-5137penicillin-binding protein5e-1375.9
NC_007517:1676604:1708413170841317102001788Geobacter metallireducens GS-15, complete genomeBeta-lactamase5e-1375.9
NC_008700:1627401:1640228164022816413821155Shewanella amazonensis SB2B, complete genomebeta-lactamase class C-like protein8e-1375.1
NC_019902:2943719:2944563294456329459721410Thioalkalivibrio nitratireducens DSM 14787, complete genomeBeta-lactamase9e-1375.1
NC_019897:700332:7379537379537399892037Thermobacillus composti KWC4 chromosome, complete genomepenicillin-binding protein, beta-lactamase class C7e-1272
NC_017047:4298207:4308717430871743098561140Rahnella aquatilis HX2 chromosome, complete genomebeta-lactam binding protein AmpH8e-1272
NC_015061:4203767:4214776421477642159151140Rahnella sp. Y9602 chromosome, complete genomebeta-lactamase8e-1272
NC_016818:4215836:4239496423949642406921197Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completepenicillin-binding protein, beta-lactamase class C8e-1271.6
NC_015690:7334786:7341798734179873437951998Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein1e-1171.2
NC_012214:474359:4926224926224937971176Erwinia pyrifoliae Ep1/96, complete genomePenicillin-binding protein3e-1169.7
NC_008095:2450500:2465541246554124669531413Myxococcus xanthus DK 1622, complete genomebeta-lactamase5e-1168.9
NC_019902:2943719:2954321295432129560301710Thioalkalivibrio nitratireducens DSM 14787, complete genomebeta-lactamase7e-1168.9
NC_007650:420745:443404443404443904501Burkholderia thailandensis E264 chromosome II, complete sequencebeta-lactamase7e-1168.6
NC_014824:263491:2758452758452773261482Ruminococcus albus 7 plasmid pRUMAL01, complete sequencebeta-lactamase1e-1068.2
NC_020126:6019850:6035252603525260367211470Myxococcus stipitatus DSM 14675, complete genomebeta-lactamase1e-1067.8
NC_014328:3823902:3843374384337438452121839Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative beta-lactamase2e-1067
NC_016935:7426389:7431878743187874338721995Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein4e-1066.2
NC_010407:2406113:2422966242296624249992034Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative beta-lactamase4e-1066.2
NC_009954:117895:1406611406611420221362Caldivirga maquilingensis IC-167, complete genomebeta-lactamase4e-1065.9
NC_020156:49666:6522065220662601041Nonlabens dokdonensis DSW-6, complete genomebeta-lactamase6e-1065.9
NC_000868:133451:1380441380441393871344Pyrococcus abyssi GE5, complete genomehypothetical beta-lactamase precursor (penicillin-binding protein)8e-1065.1
NC_013947:460398:4878834878834892501368Stackebrandtia nassauensis DSM 44728 chromosome, complete genomebeta-lactamase1e-0964.7
NC_014364:2717865:2727172272717227288901719Spirochaeta smaragdinae DSM 11293 chromosome, complete genomebeta-lactamase2e-0964.3
NC_014622:5662000:5662262566226256641241863Paenibacillus polymyxa SC2 chromosome, complete genomepenicillin-binding protein3e-0963.5
NC_014729:1248782:1266390126639012683391950Halogeometricum borinquense DSM 11551 chromosome, complete genomepenicillin-binding protein, beta-lactamase class c3e-0963.2
NC_010407:410918:4305044305044319521449Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative beta-lactamase4e-0962.8
NC_020126:6019850:6033705603370560351741470Myxococcus stipitatus DSM 14675, complete genomebeta-lactamase4e-0962.8
NC_016642:3554000:3567511356751135690011491Pseudovibrio sp. FO-BEG1 chromosome, complete genomeBeta-lactamase class C5e-0962.4
NC_013961:441719:4758934758934771341242Erwinia amylovora, complete genomePenicillin-binding protein ampH5e-0962.4
NC_020418:116500:1508081508081520311224Morganella morganii subsp. morganii KT, complete genomePenicillin-binding protein AmpH9e-0961.6
NC_014837:3126543:3132352313235231335211170Pantoea sp. At-9b chromosome, complete genomebeta-lactamase1e-0861.2
NC_015151:2285175:5134513464891356Vulcanisaeta moutnovskia 768-28 chromosome, complete genomebeta-lactamase1e-0861.2
NC_013730:3956457:3956457395645739580311575Spirosoma linguale DSM 74, complete genomebeta-lactamase1e-0861.2
NC_013166:82986:9651996519978291311Kangiella koreensis DSM 16069, complete genomebeta-lactamase2e-0860.5
NC_014165:374674:3916893916893931371449Thermobispora bispora DSM 43833 chromosome, complete genomebeta-lactamase2e-0860.5
NC_016935:4367000:4385247438524743871541908Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein3e-0860.1
NC_011894:6731115:6745775674577567468841110Methylobacterium nodulans ORS 2060, complete genomebeta-lactamase3e-0859.7
NC_015690:4643869:4648253464825346501691917Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein3e-0859.7
NC_009792:859228:8661528661528676121461Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-0859.3
NC_020181:473170:4800494800494815541506Enterobacter aerogenes EA1509E, complete genomeBeta-lactamase5e-0859.3
NC_008228:2295841:2305171230517123062801110Pseudoalteromonas atlantica T6c, complete genomebeta-lactamase5e-0859.3
NC_013222:1659619:1664564166456416656551092Robiginitalea biformata HTCC2501, complete genomebeta-lactamase precursor5e-0859.3
NC_020126:8984500:8988091898809189894581368Myxococcus stipitatus DSM 14675, complete genomebeta-lactamase5e-0859.3
NC_015160:797780:8218388218388231811344Odoribacter splanchnicus DSM 20712 chromosome, complete genomebeta-lactamase8e-0858.5
NC_014834:959986:9909259909259921991275Rhodopseudomonas palustris DX-1 chromosome, complete genomebeta-lactamase9e-0858.5
NC_004578:5269194:527426752742675275259993Pseudomonas syringae pv. tomato str. DC3000, complete genomealkaline D-peptidase, putative1e-0758.2
NC_012491:6143928:6165290616529061664741185Brevibacillus brevis NBRC 100599, complete genomeputative D-stereospecific peptide hydrolase2e-0757.4
NC_015690:7334786:7344146734414673463052160Paenibacillus mucilaginosus KNP414 chromosome, complete genomealkaline D-peptidase; serine peptidase; merops family s123e-0756.6
NC_020126:7372685:7395592739559273976432052Myxococcus stipitatus DSM 14675, complete genomebeta-lactamase3e-0756.6
NC_016582:9076686:9095636909563690968111176Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-lactamase3e-0756.6
NC_017075:1970168:1993557199355719946571101Rubrivivax gelatinosus IL144, complete genomeputative S12 family peptidase4e-0756.2
NC_014318:3947845:3965174396517439662651092Amycolatopsis mediterranei U32 chromosome, complete genomebeta-lactamase class C4e-0756.2
NC_017186:3947874:3965203396520339662941092Amycolatopsis mediterranei S699 chromosome, complete genomebeta-lactamase class C4e-0756.2
NC_010546:3071377:3073581307358130789535373Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein5e-0755.8
NC_015953:3456535:3504980350498035061971218Streptomyces sp. SirexAA-E chromosome, complete genomebeta-lactamase5e-0755.8
NC_020054:6111419:6140268614026861415211254Fibrella aestuarina BUZ 2 drat genomebeta-lactamase9e-0755.1
NC_016935:7426389:7436208743620874383642157Paenibacillus mucilaginosus 3016 chromosome, complete genomealkaline D-peptidase, serine peptidase, merops family s129e-0755.1
NC_013947:4979000:4995657499565749970451389Stackebrandtia nassauensis DSM 44728 chromosome, complete genomebeta-lactamase1e-0654.3
NC_013166:82986:99011990111004891479Kangiella koreensis DSM 16069, complete genomebeta-lactamase2e-0654.3
NC_015690:4361000:4424844442484444259951152Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAlkaline D-peptidase and alkaline D-peptidase fusion3e-0653.5
NC_013166:194614:1999531999532016321680Kangiella koreensis DSM 16069, complete genomebeta-lactamase3e-0653.1
NC_017030:8599515:8627550862755086291211572Corallococcus coralloides DSM 2259 chromosome, complete genomeputative beta-lactamase4e-0652.8
NC_016935:4117485:4190913419091341920641152Paenibacillus mucilaginosus 3016 chromosome, complete genomealkaline D-peptidase6e-0652.4
NC_015588:2200517:2201665220166522026781014Isoptericola variabilis 225 chromosome, complete genomebeta-lactamase7e-0652