Pre_GI: BLASTP Hits

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Query: NC_005126:2063667:2080442 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 2080442, End: 2081116, Length: 675

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family3e-1892
NC_010694:1966676:196889219688921969524633Erwinia tasmaniensis, complete genomeTetR-family transcriptional regulator9e-1890.5
NC_016027:1647110:165207416520741652781708Gluconacetobacter xylinus NBRC 3288, complete genometranscriptional regulator2e-1789
NC_013209:2759160:277140327714032772044642Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator TetR3e-1788.6
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator6e-1580.9
NC_007951:3631772:364493036449303645616687Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, TetR family1e-1480.1
NC_017075:1674758:169781216978121698459648Rubrivivax gelatinosus IL144, complete genomeTetR family transcriptional regulator3e-1478.6
NC_012912:2426520:243471224347122435335624Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family3e-1478.6
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family7e-1477.4
NC_015709:1459838:147418514741851474844660Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator9e-1477
NC_014210:5309121:531665153166515317286636Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family1e-1273.2
NC_014500:2402881:242317224231722423798627Dickeya dadantii 3937 chromosome, complete genomeputative DNA-binding transcriptional regulatory family of the TetR family2e-1272.8
NC_015563:3203012:321023432102343210932699Delftia sp. Cs1-4 chromosome, complete genomeTetR family transcriptional regulator2e-1272.4
NC_010572:33724:520805208052712633Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative TetR-family transcriptional regulator3e-1272
NC_010170:4463000:446622944662294466879651Bordetella petrii, complete genometranscriptional regulator, TetR family4e-1271.6
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family6e-1271.2
NC_007954:1494291:149868114986811499301621Shewanella denitrificans OS217, complete genomeregulatory protein, TetR9e-1270.5
NC_008313:3456741:347227334722733472959687Ralstonia eutropha H16 chromosome 1, complete sequencetranscriptional regulator, TetR/AcrR-family8e-1270.5
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator1e-1170.1
NC_010505:5525461:556038455603845561085702Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, TetR family2e-1169.7
NC_014666:1805806:182359318235931824237645Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR2e-1169.3
NC_014307:2735934:274403527440352744637603Ralstonia solanacearum CFBP2957 chromosome, complete genomeTetR family transcriptional regulator2e-1168.9
NC_015957:8677395:868260586826058683288684Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR4e-1168.2
NC_014831:866614:875390875390876166777Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, TetR family9e-1167
NC_009092:1504363:152507015250701525681612Shewanella loihica PV-4, complete genometranscriptional regulator, TetR family1e-1067
NC_015422:3366500:336988733698873370549663Alicycliphilus denitrificans K601 chromosome, complete genomeTetR family transcriptional regulator3e-1065.5
NC_006177:2398482:242190624219062422553648Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator2e-1065.5
NC_009484:98250:104218104218104907690Acidiphilium cryptum JF-5 chromosome, complete genomeTetR family transcriptional regulator3e-1065.1
NC_015186:132567:135424135424136152729Acidiphilium multivorum AIU301, complete genomeTetR family transcriptional regulator4e-1065.1
NC_013729:2133294:214409021440902144734645Kribbella flavida DSM 17836, complete genometranscriptional regulator, TetR family8e-1063.9
NC_013854:1277106:128092412809241281535612Azospirillum sp. B510, complete genometranscriptional regulator1e-0963.5
NC_014831:1843835:186181618618161862391576Thermaerobacter marianensis DSM 12885 chromosome, complete genomeregulatory protein TetR2e-0962.4
NC_016514:891772:907042907042907683642Enterobacter cloacae EcWSU1 chromosome, complete genomeTetR family transcriptional Regulator3e-0962
NC_008825:1113060:111747611174761118156681Methylibium petroleiphilum PM1, complete genomeputative transcription regulator protein6e-0960.8
NC_010505:5525461:556925755692575569835579Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, TetR family8e-0960.5
NC_009485:1487485:150760115076011508173573Bradyrhizobium sp. BTAi1 chromosome, complete genomeTetR family transcriptional regulator2e-0859.7
NC_013406:3650300:365940836594083660070663Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator3e-0858.5
NC_013510:4319296:432515443251544325825672Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family3e-0858.5
NC_016894:3935161:395446439544643955075612Acetobacterium woodii DSM 1030 chromosome, complete genometranscriptional regulator TetR family4e-0858.2
NC_007509:1383013:138503413850341385687654Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, TetR family6e-0857.8
NC_011891:3369170:339208633920863392775690Anaeromyxobacter dehalogenans 2CP-1, complete genometranscriptional regulator, TetR family7e-0857.4
NC_011894:6888562:689151368915136892166654Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, TetR family9e-0857
NC_014840:205723:209344209344209985642Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, TetR family1e-0757
NC_010512:734834:736231736231736884654Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, TetR family1e-0756.6
NC_015063:122000:128714128714129406693Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequenceTetR family transcriptional regulator1e-0756.6
NC_016629:3789554:382760938276093828244636Desulfovibrio africanus str. Walvis Bay chromosome, completeregulatory protein TetR1e-0756.6
NC_010170:1417615:142628214262821427076795Bordetella petrii, complete genometranscriptional regulator, TetR-family1e-0756.6
NC_008544:348500:350119350119350772654Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0756.2
NC_008062:370902:372299372299372952654Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0756.2
NC_005773:4539751:454948145494814549912432Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulatory protein2e-0756.2
NC_015064:151607:153750153750154481732Acidobacterium sp. MP5ACTX9 chromosome, complete genomeregulatory protein TetR2e-0755.8
NC_018515:4474000:447872144787214479305585Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator5e-0754.7
NC_014976:759129:785436785436786035600Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator7e-0754.3
NC_019697:4108944:412618041261804126779600Chamaesiphon minutus PCC 6605, complete genometranscriptional regulator6e-0754.3
NC_013385:1064188:107194410719441072534591Ammonifex degensii KC4, complete genometranscriptional regulator, TetR family1e-0653.5
NC_012489:3503632:352462035246203525225606Gemmatimonas aurantiaca T-27, complete genomeTetR family transcriptional regulator1e-0653.5
NC_021184:2936244:295949929594992960146648Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator1e-0653.1
NC_020244:3358399:336320833632083363792585Bacillus subtilis XF-1, complete genomeputative transcriptional regulator (TetR/AcrR family)2e-0653.1
NC_011004:4183993:418399341839934184628636Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, TetR family3e-0652.4
NC_013205:19295:294872948730161675Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, TetR family2e-0652.4
NC_012691:2614603:268837726883772689009633Tolumonas auensis DSM 9187, complete genometranscriptional regulator, TetR family2e-0652.4
NC_006322:1959918:196177419617741962358585Bacillus licheniformis ATCC 14580, complete genomeYvdT2e-0652.4
NC_010511:7024412:702935870293587030014657Methylobacterium sp. 4-46 chromosome, complete genomeTetR family transcriptional regulator4e-0652
NC_009921:3666898:373621137362113736819609Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family3e-0652
NC_013595:4031947:403419340341934034831639Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family3e-0652
NC_008253:3941938:396844639684463969285840Escherichia coli 536, complete genomeputative transcription regulator protein4e-0651.6
NC_015554:3964000:397191239719123972580669Alteromonas sp. SN2 chromosome, complete genomeTetR family transcriptional regulator4e-0651.6
NC_016111:3865823:387004138700413870712672Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, TetR family5e-0651.2
NC_007946:4779745:480969748096974810536840Escherichia coli UTI89, complete genomeUidR transriptional regulator6e-0651.2
NC_008228:816000:837355837355837951597Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, TetR family6e-0651.2
NC_003296:1461538:146352614635261464227702Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN8e-0650.4