Pre_GI: BLASTP Hits

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Query: NC_005126:1613818:1641988 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1641988, End: 1642788, Length: 801

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009253:2577316:259888825988882599730843Desulfotomaculum reducens MI-1 chromosome, complete genomebeta-lactamase domain-containing protein7e-35147
NC_008942:1768588:179414717941471794962816Methanocorpusculum labreanum Z, complete genomehypothetical protein6e-34144
NC_014614:356746:371717371717372526810Clostridium sticklandii, complete genomeMetallo-beta-lactamase superfamily protein5e-32137
UCMB5137:3660165:368937336893733690212840Bacillus atrophaeus UCMB-5137metal dependent hydrolase3e-31135
NC_012108:4907430:490964549096454910469825Desulfobacterium autotrophicum HRM2, complete genomeputative metal-dependent hydrolase1e-23110
NC_008261:1332864:133399913339991334829831Clostridium perfringens ATCC 13124, complete genomemetallo-beta-lactamase family protein7e-23107
NC_003366:1122654:112313611231361123966831Clostridium perfringens str. 13, complete genomehypothetical protein7e-23107
NC_008262:1139500:114061411406141141444831Clostridium perfringens SM101, complete genomemetallo-beta-lactamase family protein6e-23107
NC_007498:1848437:185559818555981856434837Pelobacter carbinolicus DSM 2380, complete genomemetal-dependent hydrolase of the beta-lactamase superfamily II5e-21101
NC_016817:185000:204031204031204435405Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequencebeta-lactamase domain-containing protein2e-1893.2
NC_016776:4525065:453485245348524535658807Bacteroides fragilis 638R, complete genomeputative hydrolase1e-1687
NC_006347:4562242:456789345678934568699807Bacteroides fragilis YCH46, complete genomeputative metallo-beta-lactamase1e-1687
NC_003228:4449072:445472344547234455529807Bacteroides fragilis NCTC 9343, complete genomeputative hydrolase1e-1687
NC_004557:2289135:229129722912972292160864Clostridium tetani E88, complete genomemetal dependent hydrolase2e-1686.3
NC_016645:279232:300898300898301704807Pyrobaculum sp. 1860 chromosome, complete genomebeta-lactamase-like protein2e-1583.2
NC_011979:537862:558708558708559538831Geobacter sp. FRC-32, complete genomebeta-lactamase domain protein2e-1583.2
NC_012883:636560:648982648982649803822Thermococcus sibiricus MM 739, complete genomeHydrolase, metallo-beta-lactamase superfamily4e-1582
NC_009635:518000:536402536402537256855Methanococcus aeolicus Nankai-3 chromosome, complete genomebeta-lactamase domain-containing protein1e-1480.5
NC_011978:1046279:106645210664521067219768Thermotoga neapolitana DSM 4359, complete genomeBeta-lactamase domain protein1e-1480.5
NC_015499:197945:199839199839200696858Thermodesulfobium narugense DSM 14796 chromosome, complete genomebeta-lactamase domain protein4e-1478.6
NC_015416:621513:622501622501623361861Methanosaeta concilii GP-6 chromosome, complete genomemetallo-beta-lactamase domain-containing protein5e-1375.1
NC_014033:1564733:156728015672801568071792Prevotella ruminicola 23 chromosome, complete genomemetallo-beta-lactamase family protein6e-1374.7
NC_016048:1390463:139131013913101392137828Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1273.6
NC_014408:1340016:136902913690291369808780Methanothermobacter marburgensis str. Marburg chromosome, completehydrolase3e-1272.4
NC_013407:1205747:122246112224611223336876Methanocaldococcus vulcanius M7, complete genomebeta-lactamase domain protein2e-1169.7
NC_014935:1223817:124131212413121242019708Nitratifractor saLSUginis DSM 16511 chromosome, complete genomemetal-dependent hydrolase of the beta-lactamase superfamily8e-1167.8
NC_003901:1268995:127848712784871279155669Methanosarcina mazei Go1, complete genomemetal dependent hydrolase1e-0963.5
NC_020389:1083517:109070210907021091370669Methanosarcina mazei Tuc01, complete genome7,8 dihydropteroate synthase (methanopterin)2e-0963.2
NC_015574:2145000:216174221617422162404663Methanobacterium sp. SWAN-1 chromosome, complete genomemetallo-beta-lactamase superfamily protein1e-0653.9