Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:4160500:4176154 Shigella flexneri 2a str. 2457T, complete genome

Start: 4176154, End: 4176507, Length: 354

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:3597496359749635992711776Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-67253
NC_017328:3625000:3632213363221336339161704Shigella flexneri 2002017 chromosome, complete genomehypothetical protein4e-67252
NC_008258:3550500:3557907355790735596821776Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-66249
NC_016822:3923908:3931081393108139326881608Shigella sonnei 53G, complete genomehypothetical protein2e-63240
NC_007384:3897000:3904253390425339058601608Shigella sonnei Ss046, complete genomehypothetical protein2e-63240
NC_007613:3470314:3477052347705234780651014Shigella boydii Sb227, complete genomehypothetical protein7e-62235
NC_010498:3838419:3844468384446838461201653Escherichia coli SMS-3-5, complete genomehypothetical protein1e-61234
NC_011751:4074586:4080635408063540823081674Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-61233
CP002185:3822470:3828519382851938301081590Escherichia coli W, complete genome2e-60230
NC_013941:4249871:4255920425592042575931674Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-38157
NC_012967:3549880:3563540356354035651471608Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein8e-35145
NC_012947:248000:2760292760292776361608Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein8e-35145
CU928145:3958572:396462039646203965012393Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 2)2e-34144
NC_011748:3958572:396462039646203965012393Escherichia coli 55989, complete genome2e-34144
NC_000913:3624826:363087536308753631267393Escherichia coli K12, complete genomehypothetical protein1e-33141
AC_000091:3995233:400717140071714007563393Escherichia coli W3110 DNA, complete genome1e-33141