Pre_GI: BLASTP Hits

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Query: NC_004741:4160500:4163583 Shigella flexneri 2a str. 2457T, complete genome

Start: 4163583, End: 4164608, Length: 1026

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3625000:3644096364409636453701275Shigella flexneri 2002017 chromosome, complete genomehypothetical protein0689
NC_008258:3550500:3569806356980635710801275Shigella flexneri 5 str. 8401, complete genomehypothetical protein0689
NC_013282:3781149:3786527378652737879301404Cronobacter turicensis, complete genomehypothetical protein1e-29130
NC_020181:4800298:4834154483415448358181665Enterobacter aerogenes EA1509E, complete genomeFIG00510147: hypothetical protein5e-22105
NC_008570:3220539:3225401322540132271311731Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomelipid A core - O-antigen ligase7e-1168.6
NC_009348:1475955:1523408152340815251081701Aeromonas salmonicida subsp. salmonicida A449, complete genomelipid A core - O-antigen ligase9e-1064.7
NC_015424:3112637:3119844311984431214571614Aeromonas veronii B565 chromosome, complete genomelipid A core-O-antigen ligase1e-0964.3
NC_012691:2225000:2228650222865022303471698Tolumonas auensis DSM 9187, complete genomeO-antigen polymerase2e-0757.4
NC_016944:975725:9936779936779949931317Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein5e-0755.5
NC_012582:997268:1018813101881310201291317Vibrio cholerae O395 chromosome chromosome I, complete sequencehypothetical protein5e-0755.5
NC_012578:936000:9540719540719553871317Vibrio cholerae M66-2 chromosome I, complete sequencehypothetical protein5e-0755.5
NC_009457:471337:4873944873944887101317Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein5e-0755.5
NC_002505:980595:9966569966569979721317Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein5e-0755.5
NC_017270:885179:9003039003039016191317Vibrio cholerae LMA3984-4 chromosome chromosome I, completeRbmD, Lipid A core antigen ligase6e-0755.5
NC_009832:1946401:1949597194959719508531257Serratia proteamaculans 568, complete genomeO-antigen polymerase9e-0651.6