Pre_GI: BLASTP Hits

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Query: NC_004741:366822:380502 Shigella flexneri 2a str. 2457T, complete genome

Start: 380502, End: 380831, Length: 330

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:399233399233399562330Shigella flexneri 2002017 chromosome, complete genomeCytochrome O ubiquinol oxidase protein CyoD5e-56215
NC_008258:401786:419020419020419349330Shigella flexneri 5 str. 8401, complete genomecytochrome o ubiquinol oxidase subunit IV5e-56215
NC_004337:367687:381369381369381698330Shigella flexneri 2a str. 301, complete genomecytochrome o ubiquinol oxidase subunit IV5e-56215
NC_015663:2694373:272537727253772725706330Enterobacter aerogenes KCTC 2190 chromosome, complete genomecytochrome o ubiquinol oxidase subunit IV2e-43174
NC_020181:2714559:271952727195272720402876Enterobacter aerogenes EA1509E, complete genomeCytochrome O ubiquinol oxidase subunit III2e-43174
NC_012779:2127542:213816321381632138501339Edwardsiella ictaluri 93-146, complete genomecytochrome o ubiquinol oxidase subunit IV, putative1e-32137
NC_007508:1446526:146796114679611468296336Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome O ubiquinol oxidase subunit IV6e-22102
NC_015723:1047418:105118610511861051611426Cupriavidus necator N-1 chromosome 2, complete sequencecytochrome o ubiquinol oxidase protein CyoD5e-2199.8
NC_010943:1379707:139737813973781397719342Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane quinol oxidase subunit 41e-2098.2
NC_004129:5781413:579222157922215792550330Pseudomonas fluorescens Pf-5, complete genomecytochrome o ubiquinol oxidase, subunit IV2e-2097.8
NC_009654:91096:103477103477103800324Marinomonas sp. MWYL1, complete genomecytochrome o ubiquinol oxidase subunit IV5e-2096.3
NC_015497:3614817:362285636228563623173318Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecytochrome o ubiquinol oxidase subunit IV1e-1995.1
NC_015422:2326942:234745923474592347833375Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome o ubiquinol oxidase subunit IV1e-1685.1
NC_014910:2045088:206409620640962064470375Alicycliphilus denitrificans BC chromosome, complete genomecytochrome o ubiquinol oxidase subunit iv1e-1685.1
NC_015675:4493758:449582844958284496238411Mesorhizobium opportunistum WSM2075 chromosome, complete genomecytochrome o ubiquinol oxidase subunit IV1e-1272
NC_004061:498483:514996514996515322327Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomecytochrome O ubiquinol oxidase D2e-1167.4
NC_020300:131782:146713146713147120408Bartonella australis Aust/NH1, complete genomecytochrome o ubiquinol oxidase subunit IV4e-1166.6
NC_017259:480656:492747492747493088342Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,cytochrome O ubiquinol oxidase subunit IV1e-1065.1
NC_010510:534024:558473558473559021549Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completecytochrome o ubiquinol oxidase subunit IV2e-1064.3
NC_017253:509494:514773514773515090318Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,cytochrome O ubiquinol oxidase subunit IV4e-0857
NC_002528:505951:513872513872514189318Buchnera aphidicola str. APS (Acyrthosiphon pisum), completecytochrome O ubiquinol oxidase subunit IV7e-0855.8
NC_005956:152497:167158167158167844687Bartonella henselae str. Houston-1, complete genomeCytochrome o ubiquinol oxidase subunit IV1e-0755.1
NC_005955:139907:154582154582155088507Bartonella quintana str. Toulouse, complete genomeCytochrome o ubiquinol oxidase subunit IV4e-0650.1