Pre_GI: BLASTP Hits

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Query: NC_004741:310382:336554 Shigella flexneri 2a str. 2457T, complete genome

Start: 336554, End: 336838, Length: 285

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:335160:355284355284355568285Shigella flexneri 2002017 chromosome, complete genomeprotein yaiE1e-49194
NC_004337:309833:337420337420337704285Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-49194
NC_017168:2158839:218226621822662182553288Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-31134
NC_004088:1075454:109888110988811099168288Yersinia pestis KIM, complete genomehypothetical protein2e-31134
NC_008149:1002453:102588010258801026167288Yersinia pestis Nepal516, complete genomehypothetical protein2e-31134
NC_009656:3869281:388882738888273889108282Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-21100
NC_015740:1845370:185435218543521854633282Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-1994
NC_004460:1313468:131799913179991318280282Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein2e-1994
NC_008260:2961291:297258129725812972865285Alcanivorax borkumensis SK2, complete genomehypothetical protein8e-1992.4
NC_009850:1011293:101258710125871012901315Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein (DUF1255 domain protein)2e-1684.7
NC_007498:1562270:156510415651041565418315Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein2e-1580.9
NC_013173:815696:839002839002839316315Desulfomicrobium baculatum DSM 4028, complete genomeprotein of unknown function DUF12552e-1478.2
NC_009663:2478311:249166024916602491971312Sulfurovum sp. NBC37-1, complete genomehypothetical protein2e-1477.4
NC_011146:3537546:355831135583113558622312Geobacter bemidjiensis Bem, complete genomeprotein of unknown function DUF12555e-1269.7
NC_018531:2085939:210157321015732101884312Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein6e-1269.7
NC_010676:3009980:304045830404583040778321Burkholderia phytofirmans PsJN chromosome 2, complete sequenceprotein of unknown function DUF12556e-1269.7
NC_007953:1434705:145007614500761450396321Burkholderia xenovorans LB400 chromosome 3, complete sequencehypothetical protein2e-1167.8
NC_008391:865340:868053868053868373321Burkholderia cepacia AMMD chromosome 2, complete sequenceprotein of unknown function DUF12552e-1167.8
NC_007298:3271071:327300832730083273319312Dechloromonas aromatica RCB, complete genomeProtein of unknown function DUF12554e-1166.6
NC_010814:2074266:207426620742662074580315Geobacter lovleyi SZ, complete genomeprotein of unknown function DUF12551e-1065.1
NC_017187:691769:711614711614711928315Arcobacter butzleri ED-1, complete genomehypothetical protein3e-1063.9
NC_008702:2378890:239169723916972392020324Azoarcus sp. BH72, complete genomeconserved hypothetical protein4e-1063.2
NC_015422:3513689:355832135583213558638318Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein8e-1062.4
NC_006361:1720031:172327517232751723586312Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-0858.5