Pre_GI: BLASTP Hits

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Query: NC_004741:310382:316401 Shigella flexneri 2a str. 2457T, complete genome

Start: 316401, End: 317051, Length: 651

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:309833:324871324871325521651Shigella flexneri 2a str. 301, complete genomehypothetical bacteriophage protein8e-117419
AC_000091:1191353:120907812090781209707630Escherichia coli W3110 DNA, complete genomehypothetical protein2e-49195
NC_000913:1188999:120672412067241207353630Escherichia coli K12, complete genomee14 prophage; predicted protein2e-49195
NC_011750:2928990:293909929390992940049951Escherichia coli IAI39 chromosome, complete genomehypothetical protein5e-47187
NC_011742:2823000:283981928398192840562744Escherichia coli S88 chromosome, complete genomephage tail protein1e-46186
NC_007946:2894793:290748229074822908225744Escherichia coli UTI89, complete genomehypothetical protein1e-46186
NC_011740:621408:625084625084626013930Escherichia fergusonii ATCC 35469, complete genomehypothetical protein from phage origin3e-43174
NC_009436:2776410:278929127892912789980690Enterobacter sp. 638, complete genomehypothetical protein8e-43173
NC_010473:2548946:256133125613312561849519Escherichia coli str. K-12 substr. DH10B, complete genomeCPS-53 (KpLE1) prophage; conserved protein3e-35148
NC_000913:2455037:246956624695662470084519Escherichia coli K12, complete genomeCPS-53 (KpLE1) prophage; conserved protein3e-35148
AC_000091:2462461:247699024769902477508519Escherichia coli W3110 DNA, complete genomehypothetical protein3e-35148
NC_002655:301940:304629304629305339711Escherichia coli O157:H7 EDL933, complete genomeunknown protein from prophage CP-933H2e-21102
NC_011094:2115750:2128065212806521296091545Salmonella enterica subsp. enterica serovar Schwarzengrund strtail protein8e-21100
NC_016857:2027311:2042364204236420439261563Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tail protein1e-2099.8
NC_017046:2026672:2041725204172520432871563Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage tail fiber protein1e-2099.8
NC_011294:2009388:2021082202108220226441563Salmonella enterica subsp. enterica serovar Enteritidis strphage tail fiber protein1e-2099.8
NC_011205:2137696:2149389214938921509511563Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail protein1e-2099.8
NC_016856:2085283:2096201209620120977631563Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-2099.8
NC_016863:2029340:2044393204439320459551563Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage tail-like protein1e-2099.8
NC_016810:2027311:2042364204236420439591596Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage tail fiber protein1e-2099.8
NC_007712:1182518:1193473119347311945671095Sodalis glossinidius str. 'morsitans', complete genomeputative phage tail protein3e-2098.6
NC_010102:1779707:1801118180111818022121095Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1996.3
NC_003197:2327474:2335364233536423366051242Salmonella typhimurium LT2, complete genomehypothetical protein3e-1995.1
NC_010102:683444:7092047092047104451242Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1995.1
NC_016810:2325190:2333080233308023343211242Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein3e-1995.1
NC_016856:2379027:2386917238691723881581242Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1995.1
NC_016860:2323017:2330907233090723321481242Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-1995.1
NC_016863:2324293:2335109233510923363501242Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-1995.1
NC_016857:2325190:2333080233308023343811302Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-1995.1
NC_017046:2324554:2332444233244423337451302Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein3e-1995.1
NC_011083:2375061:2382944238294423841851242Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-1995.1
NC_009778:1556222:1586491158649115876721182Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1994
NC_002937:255790:2597392597392607551017Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetail fiber protein, putative8e-1167
NC_002937:2933000:295033129503312951146816Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetail fiber protein, putative3e-1065.1
NC_011353:305820:310332310332310742411Escherichia coli O157:H7 str. EC4115 chromosome, complete genometail fiber protein6e-0960.8
NC_002695:301939:306451306451306861411Escherichia coli O157:H7 str. Sakai, complete genomeputative tail fiber protein6e-0960.8
NC_013008:306953:310332310332310766435Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-0960.8
NC_013008:306953:308509308509309303795Escherichia coli O157:H7 str. TW14359 chromosome, complete genometail fiber protein from prophage CP-933H1e-0756.6
NC_011353:305820:308509308509309303795Escherichia coli O157:H7 str. EC4115 chromosome, complete genometail fiber protein1e-0756.6
NC_002695:301939:304628304628305422795Escherichia coli O157:H7 str. Sakai, complete genomeputative tail fiber protein1e-0756.6
NC_011742:2823000:283830528383052838799495Escherichia coli S88 chromosome, complete genomehypothetical protein4e-0651.6