Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3093545 Shigella flexneri 2a str. 2457T, complete genome

Start: 3093545, End: 3094150, Length: 606

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:314242331424233143028606Shigella flexneri 2002017 chromosome, complete genomeMembrane protein3e-99360
NC_004337:3049118:310405631040563104661606Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-99360
NC_008800:3955284:396122039612203961819600Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,membrane protein8e-31133
NC_015224:3820338:383951838395183840099582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,membrane protein1e-30132
NC_010634:3905369:391499039149903915577588Yersinia pseudotuberculosis PB1/+, complete genomeputative transcriptional regulator, CadC1e-28126
NC_009708:692508:708541708541709128588Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-28125
NC_006155:3992818:400349940034994004086588Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-28125
NC_010465:733916:748971748971749558588Yersinia pseudotuberculosis YPIII, complete genomeputative transcriptional regulator, CadC5e-28124
NC_010102:2721374:273210127321012732865765Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0754.7
NC_011080:383441:390063390063390797735Salmonella enterica subsp. enterica serovar Newport str. SL254,putative transmembrane regulator4e-0754.7
NC_006511:2467763:247842124784212479155735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator4e-0754.7
NC_011083:403022:432730432730433464735Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative transmembrane regulator4e-0754.7
NC_011147:2463299:247395724739572474691735Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator4e-0754.7
NC_003197:367430:385573385573386337765Salmonella typhimurium LT2, complete genomeputative inner membrane protein4e-0754.7
NC_016810:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium strtransmembrane regulator4e-0754.7
NC_016856:365665:386264386264387028765Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-0754.7
NC_016857:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-0754.7
NC_016863:367404:385553385553386317765Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-0754.7
NC_017046:366905:385084385084385818735Salmonella enterica subsp. enterica serovar Typhimurium str. 798transmembrane regulator4e-0754.7
NC_006905:401154:430112430112430876765Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein5e-0754.3
NC_012125:373630:380252380252380986735Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator5e-0754.3
NC_011149:361765:368387368387369121735Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transmembrane regulator1e-0653.1
NC_011294:346915:364877364877365641765Salmonella enterica subsp. enterica serovar Enteritidis strtransmembrane regulator1e-0653.1
NC_011094:380428:398373398373399107735Salmonella enterica subsp. enterica serovar Schwarzengrund strtransmembrane regulator1e-0653.1
NC_004631:2584244:259491425949142595648735Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator2e-0652.8
NC_003198:378844:385465385465386199735Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator2e-0652.8
NC_016832:2581145:259181525918152592549735Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator2e-0652.8
NC_015663:1:210462104621852807Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator3e-0652
NC_015224:1067390:107849910784991078915417Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein4e-0651.6
NC_008800:3642679:366378836637883664204417Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-0651.2
NC_004631:2584244:259171125917112592454744Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator7e-0650.4
NC_003198:378844:388659388659389402744Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator7e-0650.4
NC_016832:2581145:258861225886122589355744Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator7e-0650.4
NC_012125:373630:383397383397384176780Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator9e-0650.1
NC_010102:2721374:272890927289092729652744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-0650.1
NC_011080:383441:393244393244393987744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator9e-0650.1
NC_011083:403022:435911435911436654744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator9e-0650.1