Pre_GI: BLASTP Hits

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Query: NC_004741:1823000:1831849 Shigella flexneri 2a str. 2457T, complete genome

Start: 1831849, End: 1832073, Length: 225

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1835108:184744618474461847676231Shigella flexneri 2002017 chromosome, complete genomeleucine-rich repeat protein1e-37154
NC_010498:1700447:1708354170835417096101257Escherichia coli SMS-3-5, complete genomehypothetical protein6e-36149
NC_011750:1809943:1819362181936218206181257Escherichia coli IAI39 chromosome, complete genomehypothetical protein7e-36149
NC_007606:1515403:152901715290171529355339Shigella dysenteriae Sd197, complete genomehypothetical protein3e-35147
NC_002655:2015000:2023612202361220248711260Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-35146
NC_002695:2056545:2063602206360220648611260Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-35146
NC_013008:1971662:1977178197717819784371260Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector3e-35146
NC_013941:1857724:1868066186806618693251260Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-35146
NC_011353:1971145:1978202197820219794611260Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeleucine-rich repeat protein3e-35146
NC_011751:1714131:1739999173999917412941296Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-35146