Pre_GI: BLASTP Hits

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Query: NC_004631:4687270:4705375 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4705375, End: 4706286, Length: 912

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:4560902:458601445860144586925912Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-154545
NC_011147:4460726:449496244949624495873912Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-154545
NC_010102:4745949:476399447639944764905912Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-153542
NC_011205:4718239:474334147433414744252912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-153541
NC_011080:4703266:472785447278544728765912Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein3e-153541
NC_006905:4638707:466613246661324667043912Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-152537
NC_012125:4716000:474344747434474744358912Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-152537
NC_015761:4355335:437175543717554372666912Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-128459
NC_011747:115864:119318119318120259942Escherichia coli S88 plasmid pECOS88, complete sequencehypothetical protein9e-1271.2
NC_009837:127000:133063133063134004942Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein9e-1271.2
NC_010334:2615260:263425226342522635220969Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein2e-0963.5