Pre_GI: BLASTP Hits

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Query: NC_004631:4687270:4704406 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4704406, End: 4705014, Length: 609

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:474248547424854743093609Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-107385
NC_006905:4638707:466517046651704665778609Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-106384
NC_011294:4560902:458505445850544585662609Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-106384
NC_011080:4703266:472689447268944727502609Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-106384
NC_010102:4745949:476188547618854762493609Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-106383
NC_011147:4460726:449397844939784494586609Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-106383
NC_011274:4538722:456287245628724563480609Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-105381
NC_011205:4718239:474237947423794742987609Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-104378
NC_011415:308825:315173315173315781609Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-86318
NC_015761:4355335:436955643695564370164609Salmonella bongori NCTC 12419, complete genomehypothetical protein5e-84310
NC_016832:4425330:443335044333504433892543Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-71266
NC_012125:4536383:454440245444024544944543Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein9e-71266
NC_003198:4453457:446147744614774462019543Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-71266