Pre_GI: BLASTP Hits

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Query: NC_004603:3080614:3098708 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 3098708, End: 3099979, Length: 1272

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016816:1545354:1558942155894215601501209Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family6e-2099
NC_010322:583842:5894255894255907111287Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein4e-1996.3
NC_015563:2018038:2032460203246020336111152Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein5e-1892.4
NC_020829:636773:6418616418616431711311Pseudomonas denitrificans ATCC 13867, complete genomeintegrase2e-1790.5
NC_015726:406450:4141604141604153561197Cupriavidus necator N-1 chromosome 1, complete sequencetyrosine-based site-specific recombinase CMGI-77e-1788.6
NC_017986:2548720:2556613255661325578421230Pseudomonas putida ND6 chromosome, complete genomephage integrase family protein5e-1685.9
NC_004578:5192110:5195601519560151968661266Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family1e-1584.7
NC_008800:1090000:1099313109931311005181206Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase1e-1584.3
NC_006350:595893:6374336374336386111179Burkholderia pseudomallei K96243 chromosome 1, complete sequencephage integrase family protein2e-1584
NC_004547:1174650:1187197118719711884081212Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase1e-1481.6
NC_020829:940692:9915479915479928121266Pseudomonas denitrificans ATCC 13867, complete genomephage integrase family site specific recombinase1e-1378.2
NC_012917:1840172:1850685185068518518751191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein1e-1378.2
NC_005773:4899252:4901655490165549029171263Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family1e-1377.8
NC_008577:2604281:2607529260752926088511323Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein2e-1377.8
NC_014640:6815264:6840529684052968417851257Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein3e-1376.6
NC_015458:2998000:3009145300914530104251281Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein8e-1375.1
NC_004129:3452885:3461943346194334631661224Pseudomonas fluorescens Pf-5, complete genomesite-specific recombinase, phage integrase family2e-1273.6
NC_010571:2943369:2950545295054529517831239Opitutus terrae PB90-1, complete genomeintegrase family protein2e-1170.9
NC_009524:1369395:1381372138137213825621191Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein3e-1170.1
NC_020209:1949500:1955255195525519565081254Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase, phage integrase family protein1e-1067.8
NC_011283:4438500:4462553446255344637581206Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase6e-1065.9
NC_011663:674069:6764326764326777541323Shewanella baltica OS223 chromosome, complete genomeintegrase family protein9e-1065.1
NC_009665:639914:6422716422716435931323Shewanella baltica OS185 chromosome, complete genomephage integrase family protein9e-1065.1
NC_012880:3421500:3438268343826834394911224Dickeya dadantii Ech703, complete genomeintegrase family protein1e-0964.7
CU928160:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase1e-0964.3
NC_011741:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase1e-0964.3
NC_009436:3117661:3144337314433731455391203Enterobacter sp. 638, complete genomephage integrase family protein2e-0963.9
NC_014562:2563466:259475725947572595506750Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD3e-0963.5
NC_005773:3220500:3232787323278732339951209Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH05, site-specific recombinase, phage integrase family5e-0962.8
NC_013008:3525428:3556173355617335573781206Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-0861.2
NC_002695:3468873:3497212349721234984171206Escherichia coli O157:H7 str. Sakai, complete genomeputative site specific recombinase1e-0861.2
NC_011353:3573641:3601448360144836026531206Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-0861.2
NC_013941:3300000:3334944333494433361491206Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesite specific recombinase1e-0861.2
NC_010067:191190:2005492005492016041056Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0860.8
NC_016514:3573400:3598096359809635993641269Enterobacter cloacae EcWSU1 chromosome, complete genometyrosine recombinase XerD8e-0858.5
NC_009792:3665369:3688867368886736899851119Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0758.2
NC_002655:3538656:3564664356466435657071044Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-0755.8
NC_003919:3396136:3409969340996934112881320Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase/recombinase2e-0653.9