Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:5336773:5338911 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5338911, End: 5339549, Length: 639

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:1843000:186261418626141863255642Vibrio sp. Ex25 chromosome 1, complete genomealanyl-tRNA synthetase domain protein9e-57219
NC_007645:713930:719088719088719726639Hahella chejuensis KCTC 2396, complete genomepredicted metal-dependent Hydrolase related to alanyl-tRNA synthetase HxxxH domain1e-54213
NC_015680:1275252:127754512775451278186642Pyrococcus yayanosii CH1 chromosome, complete genomealanyl-tRNA synthetase-like protein3e-26118
NC_015474:538544:555075555075555716642Pyrococcus sp. NA2 chromosome, complete genomealanyl-tRNA synthetase-related protein3e-25114
NC_017954:345430:3586943586943613992706Thermogladius cellulolyticus 1633 chromosome, complete genomealanyl-tRNA synthetase5e-1684.3
NC_015435:537483:5395825395825422932712Metallosphaera cuprina Ar-4 chromosome, complete genomealanyl-tRNA synthetase9e-1683.6
NC_014961:1071424:1076526107652610792522727Desulfurococcus mucosus DSM 2162 chromosome, complete genomealanyl-tRNA synthetase2e-1582
NC_012622:1579927:158253515825351583245711Sulfolobus islandicus Y.G.57.14 chromosome, complete genomethreonyl/alanyl tRNA synthetase SAD1e-1480.1
NC_002754:285759:2916542916542943562703Sulfolobus solfataricus P2, complete genomealanyl-tRNA synthetase1e-1479.7
NC_014160:869873:8846498846498873752727Thermosphaera aggregans DSM 11486 chromosome, complete genomealanyl-tRNA synthetase2e-1479.3
NC_019977:1621939:163636916363691637073705Methanomethylovorans hollandica DSM 15978, complete genomeputative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain protein2e-1479
NC_017275:1669587:1682532168253216852342703Sulfolobus islandicus HVE10/4 chromosome, complete genomealanyl-tRNA synthetase4e-1477.8
NC_013769:1739363:1751481175148117541832703Sulfolobus islandicus L.D.8.5 chromosome, complete genomealanyl-tRNA synthetase5e-1477.8
NC_012589:1723897:1736190173619017388922703Sulfolobus islandicus L.S.2.15, complete genomealanyl-tRNA synthetase5e-1477.8
NC_017276:1525102:1538048153804815407502703Sulfolobus islandicus REY15A chromosome, complete genomealanyl-tRNA synthetase5e-1477.8
NC_012623:929080:9335989335989363002703Sulfolobus islandicus Y.N.15.51 chromosome, complete genomealanyl-tRNA synthetase5e-1477.8
NC_012622:1679812:1690323169032316930252703Sulfolobus islandicus Y.G.57.14 chromosome, complete genomealanyl-tRNA synthetase5e-1477.8
NC_012632:1745921:1758218175821817609202703Sulfolobus islandicus M.16.27 chromosome, complete genomealanyl-tRNA synthetase1e-1376.6
NC_012588:1619376:1632320163232016350222703Sulfolobus islandicus M.14.25 chromosome, complete genomealanyl-tRNA synthetase1e-1376.6
NC_012726:1646330:1658450165845016611522703Sulfolobus islandicus M.16.4 chromosome, complete genomealanyl-tRNA synthetase1e-1376.6
NC_014650:603500:606529606529607299771Geobacillus sp. Y4.1MC1 chromosome, complete genomethreonyl/alanyl tRNA synthetase SAD2e-1375.9
NC_006322:2658587:2665677266567726669091233Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-1375.9
NC_006270:2657726:2664816266481626660481233Bacillus licheniformis ATCC 14580, complete genomealanyl-tRNA synthetase2e-1375.9
NC_018644:137755:144439144439145122684Alpha proteobacterium HIMB59 chromosome, complete genomethreonyl/alanine--tRNA ligase family protein,tRNA synthetase class II family protein2e-1375.5
NC_014205:1257652:128212512821251282844720Staphylothermus hellenicus DSM 12710 chromosome, complete genomeThreonyl/alanyl tRNA synthetase SAD2e-1375.5
NC_009776:157311:1713461713461740512706Ignicoccus hospitalis KIN4/I, complete genomealanyl-tRNA synthetase3e-1375.1
NC_011766:1035858:1040148104014810428742727Desulfurococcus kamchatkensis 1221n chromosome, complete genomealanyl-tRNA synthetase3e-1375.1
NC_009440:1568500:1577875157787515805892715Metallosphaera sedula DSM 5348 chromosome, complete genomealanyl-tRNA synthetase6e-1374.3
NC_015518:1160430:1170786117078611734942709Acidianus hospitalis W1 chromosome, complete genomealanyl-tRNA synthetase7e-1373.9
NC_014374:193391:2439302439302466712742Acidilobus saccharovorans 345-15 chromosome, complete genomeAlanyl-tRNA synthetase6e-1373.9
NC_002947:1268089:127031212703121271100789Pseudomonas putida KT2440, complete genomesynthetase, putative8e-1373.6
NC_014364:894373:9223109223109234851176Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeAlanyl-tRNA synthetase, class IIc1e-1273.2
NC_014205:1331594:1335817133581713385462730Staphylothermus hellenicus DSM 12710 chromosome, complete genomealanyl-tRNA synthetase2e-1272.4
NC_009440:2093500:209387620938762094583708Metallosphaera sedula DSM 5348 chromosome, complete genomeAla-tRNA(Pro) hydrolase4e-1271.6
NC_003413:181525:1957861957861970001215Pyrococcus furiosus DSM 3638, complete genomepartial alanyl-tRNA synthetase matches COOH terminus half4e-1271.6
NC_013406:5066769:5102668510266851038521185Paenibacillus sp. Y412MC10 chromosome, complete genomeThreonyl/alanyl tRNA synthetase SAD3e-1271.6
NC_016047:2631511:2635834263583426370841251Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completealanine--tRNA ligase3e-1271.6
NC_003106:1367404:1371315137131513740292715Sulfolobus tokodaii str. 7, complete genomealanyl-tRNA synthetase4e-1271.2
NC_009033:1042500:1053468105346810561972730Staphylothermus marinus F1, complete genomealanyl-tRNA synthetase1e-1170.1
NC_011420:1178762:119426111942611194995735Rhodospirillum centenum SW, complete genomealanyl-tRNA synthetase AlaS1e-1170.1
NC_007181:1238806:1241676124167612443992724Sulfolobus acidocaldarius DSM 639, complete genomealanyl-tRNA synthetase1e-1170.1
NC_015474:723553:7589977589977602111215Pyrococcus sp. NA2 chromosome, complete genomealanyl-tRNA synthetase2e-1169.3
NC_007955:1108000:112376611237661124470705Methanococcoides burtonii DSM 6242, complete genomeThreonyl/alanyl tRNA synthetase, SAD4e-1168.2
NC_019791:1272850:1293802129380212965222721Caldisphaera lagunensis DSM 15908 chromosome, complete genomealanine--tRNA ligase/alanyl-tRNA synthetase1e-1066.6
NC_003911:2042389:204582620458262046548723Silicibacter pomeroyi DSS-3, complete genomehypothetical protein1e-1066.6
NC_021182:2360500:2371373237137323725721200Clostridium pasteurianum BC1, complete genomeputative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain protein1e-1066.2
NC_007005:5154317:517567651756765176467792Pseudomonas syringae pv. syringae B728a, complete genomesynthetase, putative2e-1065.9
NC_013407:333387:3448303448303475172688Methanocaldococcus vulcanius M7, complete genomealanyl-tRNA synthetase3e-1065.1
NC_018515:989616:1000830100083010034572628Desulfosporosinus meridiei DSM 13257 chromosome, complete genomealanyl-tRNA synthetase4e-1064.7
NC_013192:1941002:1950348195034819529632616Leptotrichia buccalis DSM 1135, complete genomealanyl-tRNA synthetase6e-1063.9
NC_014122:726070:7460587460587486792622Methanocaldococcus infernus ME chromosome, complete genomealanyl-tRNA synthetase4e-0961.6
NC_015954:2764919:279725027972502797996747Halophilic archaeon DL31 chromosome, complete genomeAlanyl-tRNA synthetase, class IIc4e-0961.2
NC_002516:2306776:231740023174002318134735Pseudomonas aeruginosa PAO1, complete genomehypothetical protein5e-0961.2
NC_014393:1590893:1591929159192915931341206Clostridium cellulovorans 743B chromosome, complete genomeAlanyl-tRNA synthetase, class IIc-like9e-0960.1
NC_015387:2042042:2045547204554720467101164Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeThreonyl/alanyl tRNA synthetase SAD1e-0860.1
NC_008698:197294:1980251980252007482724Thermofilum pendens Hrk 5, complete genomealanyl-tRNA synthetase2e-0859.3
NC_014657:1193985:1204789120478912074282640Caldicellulosiruptor owensensis OL chromosome, complete genomealanyl-tRNA synthetase2e-0858.9
NC_014471:1068000:1082272108227210850162745Ignisphaera aggregans DSM 17230 chromosome, complete genomealanyl-tRNA synthetase3e-0858.5
NC_010723:1967106:1972357197235719735561200Clostridium botulinum E3 str. Alaska E43, complete genomedhha1 domain protein3e-0858.5
NC_014931:3886405:3890057389005738926812625Variovorax paradoxus EPS chromosome, complete genomealanyl-tRNA synthetase5e-0858.2
NC_014374:344500:368207368207368953747Acidilobus saccharovorans 345-15 chromosome, complete genomeThreonyl/alanyl tRNA synthetase, SAD5e-0857.8
NC_010674:1822963:1836119183611918373181200Clostridium botulinum B str. Eklund 17B, complete genomedhha1 domain protein6e-0857.4
NC_008782:2062962:2079348207934820819722625Acidovorax sp. JS42, complete genomealanyl-tRNA synthetase7e-0857.4
NC_010337:524605:5420305420305446812652Heliobacterium modesticaldum Ice1, complete genomealanyl-tRNA synthetase8e-0857
NC_013922:1911338:1933155193315519359352781Natrialba magadii ATCC 43099 chromosome, complete genomealanyl-tRNA synthetase1e-0756.6
NC_012804:141914:1460911460911473081218Thermococcus gammatolerans EJ3, complete genomeAlanyl-tRNA synthetase-related protein (C-terminus)1e-0756.6
NC_015865:1260461:1263184126318412659252742Thermococcus sp. 4557 chromosome, complete genomealanyl-tRNA synthetase1e-0756.2
NC_016051:1681076:1713482171348217162232742Thermococcus sp. AM4 chromosome, complete genomealanyl-tRNA synthetase1e-0756.2
NC_012804:271459:2945282945282972692742Thermococcus gammatolerans EJ3, complete genomeAlanyl-tRNA synthetase (alaS)3e-0755.5
NC_010483:1441614:1443671144367114462622592Thermotoga sp. RQ2, complete genomealanyl-tRNA synthetase4e-0754.7
NC_013971:2876733:2876733287673328793632631Erwinia amylovora ATCC 49946 chromosome, complete genomealanyl-tRNA synthetase4e-0754.7
NC_016627:3295008:3306923330692333095622640Clostridium clariflavum DSM 19732 chromosome, complete genomealanyl-tRNA synthetase6e-0754.3
NC_014623:4662990:4662990466299046641921203Stigmatella aurantiaca DW4/3-1 chromosome, complete genomethreonyl/alanyl tRNA synthetase6e-0754.3
NC_015732:191554:2107002107002119501251Spirochaeta caldaria DSM 7334 chromosome, complete genomeThreonyl/alanyl tRNA synthetase SAD8e-0753.9
NC_014210:3671495:3675125367512536777912667Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,alanyl-tRNA synthetase2e-0652.8
NC_012883:1603744:1609892160989216111211230Thermococcus sibiricus MM 739, complete genomeAlanyl-tRNA synthetase-related protein2e-0652.4
NC_018870:1695588:1699227169922717018632637Thermacetogenium phaeum DSM 12270 chromosome, complete genomealanyl-tRNA synthetase AlaS3e-0652
NC_007955:2281070:2297727229772723004982772Methanococcoides burtonii DSM 6242, complete genomealanyl-tRNA synthetase4e-0651.6