Pre_GI: BLASTP Hits

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Query: NC_004578:4465247:4478083 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4478083, End: 4478901, Length: 819

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:5481629:549516754951675495979813Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-81302
NC_018080:4465618:448086544808654481506642Pseudomonas aeruginosa DK2 chromosome, complete genometol-pal system protein YbgF1e-71269
NC_008463:4566976:459279545927954593619825Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-71268
NC_002516:1031386:105791610579161058740825Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-71268
NC_011770:4763506:477965147796514780475825Pseudomonas aeruginosa LESB58, complete genomehypothetical protein3e-71268
NC_003902:3544743:356206535620653562883819Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein2e-2099.4
NC_002488:1775629:180259318025931803408816Xylella fastidiosa 9a5c, complete genomehypothetical protein3e-2099
NC_010694:2565580:259147725914772592289813Erwinia tasmaniensis, complete genomehypothetical protein4e-2098.6
NC_015726:2817352:283248528324852833243759Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein6e-2098.2
NC_012125:793812:795685795685796473789Salmonella enterica subsp. enterica serovar Paratyphi C straintol-pal system protein YbgF3e-1995.9
NC_011083:862901:866064866064866852789Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tetratricopeptide TPR_2 repeat protein2e-1995.9
NC_003197:815964:817825817825818613789Salmonella typhimurium LT2, complete genomeputative periplasmic protein2e-1995.9
NC_010102:2287934:230551923055192306307789Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1995.9
NC_011080:819103:822266822266823054789Salmonella enterica subsp. enterica serovar Newport str. SL254,tetratricopeptide TPR_2 repeat protein2e-1995.9
NC_011149:779903:781767781767782555789Salmonella enterica subsp. enterica serovar Agona str. SL483,tetratricopeptide TPR_2 repeat protein2e-1995.9
NC_011205:839425:842588842588843376789Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tol-pal system protein YbgF2e-1995.9
NC_011274:793681:795542795542796330789Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tol-pal system protein YbgF2e-1995.9
NC_016831:2209834:222671722267172227505789Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-1995.9
NC_012856:737170:761866761866762651786Ralstonia pickettii 12D chromosome 1, complete genometol-pal system protein YbgF1e-1893.6
NC_010682:701912:724015724015724800786Ralstonia pickettii 12J chromosome 1, complete sequencetol-pal system protein YbgF1e-1893.6
NC_007973:2888824:290719829071982907956759Ralstonia metallidurans CH34 chromosome 1, complete sequenceTPR repeat4e-1892
NC_018012:1935500:195009019500901950956867Thiocystis violascens DSM 198 chromosome, complete genomeBeta-barrel assembly machine subunit BamD6e-1891.7
NC_012214:2673058:269751526975152698312798Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein5e-1685.1
NC_014931:2929695:293146529314652932214750Variovorax paradoxus EPS chromosome, complete genometol-pal system protein YbgF7e-1374.7
NC_014844:2056943:206338820633882064278891Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometol-pal system protein YbgF1e-1273.9
NC_011000:3493575:350084835008483501597750Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-1273.9
NC_008060:341851:352695352695353444750Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencehypothetical protein1e-1273.9
NC_012791:2832001:283734128373412838090750Variovorax paradoxus S110 chromosome 1, complete genometol-pal system protein YbgF1e-1273.9
NC_014394:2765261:278223427822342782974741Gallionella capsiferriformans ES-2 chromosome, complete genometol-pal system protein YbgF1e-1170.1
NC_015138:2025000:203092920309292031735807Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetol-pal system protein YbgF4e-1168.9
NC_014910:1708045:170995317099531710741789Alicycliphilus denitrificans BC chromosome, complete genometol-pal system protein ybgf4e-1168.6
NC_015563:3786192:380971438097143810496783Delftia sp. Cs1-4 chromosome, complete genometol-pal system protein YbgF2e-1066.2
NC_009883:1262000:126518812651881265940753Rickettsia bellii OSU 85-389, complete genomehypothetical protein3e-0962.4
NC_007940:266000:269483269483270235753Rickettsia bellii RML369-C, complete genomehypothetical protein3e-0962.4
NC_015682:379373:401480401480402385906Thermodesulfobacterium sp. OPB45 chromosome, complete genomehypothetical protein1e-0757
NC_020126:7255111:727943072794307280278849Myxococcus stipitatus DSM 14675, complete genometol-pal system protein YbgF4e-0755.5
NC_007498:3655304:888688869737852Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein4e-0652.4