Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3213297 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3213297, End: 3214631, Length: 1335

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:5833819:5841338584133858426571320Pseudomonas putida ND6 chromosome, complete genomesite-specific recombinase, phage integrase family3e-119428
NC_004578:3193490:3209245320924532105491305Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family7e-118424
NC_020829:2754203:2762736276273627639051170Pseudomonas denitrificans ATCC 13867, complete genomesite-specific recombinase, phage integrase family protein4e-113408
NC_007482:607365:6205506205506217611212Pseudoalteromonas haloplanktis TAC125 chromosome II, completeputative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 22e-52207
NC_009092:2282437:2293640229364022949111272Shewanella loihica PV-4, complete genomephage integrase family protein3e-45183
NC_014541:2122788:2128465212846521297631299Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein5e-43175
NC_008577:2511326:2527441252744125287361296Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein8e-41168
NC_009348:2125698:2153762215376221550391278Aeromonas salmonicida subsp. salmonicida A449, complete genomephage integrase3e-38159
NC_016901:2594942:2599191259919126004861296Shewanella baltica OS678 chromosome, complete genomeintegrase family protein4e-37156
NC_009997:2635025:2639274263927426405691296Shewanella baltica OS195, complete genomeintegrase family protein4e-37156
NC_017986:5833819:584275258427525843708957Pseudomonas putida ND6 chromosome, complete genomeputative phage integrase3e-36153
NC_009052:2512373:2543022254302225443171296Shewanella baltica OS155, complete genomephage integrase family protein3e-36153
NC_016745:2229271:2237163223716322384521290Oceanimonas sp. GK1 chromosome, complete genomeintegrase family protein8e-35148
NC_010801:421906:4249834249834261251143Burkholderia multivorans ATCC 17616 chromosome 3, completetyrosine recombinase2e-28126
NC_010678:642769:6427696427696439621194Ralstonia pickettii 12J chromosome 2, complete sequenceintegrase family protein4e-28126
NC_011662:2402408:2409839240983924110231185Thauera sp. MZ1T, complete genomeintegrase family protein5e-27122
NC_015137:2582467:2587301258730125890131713Burkholderia sp. CCGE1001 chromosome 2, complete sequencehypothetical protein5e-27122
NC_015383:368500:3828523828523840241173Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequenceintegrase family protein1e-25118
NC_016616:2768053:2776311277631127774891179Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase XerD9e-26118
NC_016626:1825845:1859727185972718609681242Burkholderia sp. YI23 plasmid byi_1p, complete sequenceintegrase family protein1e-25117
NC_010512:1015557:1029161102916110309031743Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceintegrase family protein4e-25116
NC_010515:1678487:1720173172017317218641692Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceintegrase family protein5e-24112
NC_007434:2290934:2293652229365222953311680Burkholderia pseudomallei 1710b chromosome I, complete sequencephage integrase family protein1e-22108
NC_007510:1959883:2009443200944320112091767Burkholderia sp. 383 chromosome 1, complete sequencePhage integrase8e-23108
NC_014118:987889:1035939103593910376931755Burkholderia sp. CCGE1002 chromosome chromosome 2, completeintegrase family protein8e-23108
NC_008060:1346581:1350978135097813525011524Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase7e-22105
NC_008544:818730:8313328313328330111680Burkholderia cenocepacia HI2424 chromosome 3, complete sequencephage integrase family protein1e-21104
NC_016002:2453919:2459603245960324607061104Pseudogulbenkiania sp. NH8B, complete genomephage integrase family protein3e-21103
NC_008061:2582000:2589264258926425909611698Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencephage integrase3e-21103
NC_008543:2666846:2676028267602826777251698Burkholderia cenocepacia HI2424 chromosome 2, complete sequencephage integrase family protein2e-21103
NC_010682:1913941:1915633191563319173331701Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein2e-21103
NC_009254:745706:7473067473067489971692Burkholderia vietnamiensis G4 chromosome 3, complete sequencephage integrase family protein2e-20100
NC_013193:38918:4192241922431151194Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmidhypothetical protein3e-2099.8
NC_007337:10464:1046410464121551692Ralstonia eutropha JMP134 plasmid 1, complete sequencephage integrase5e-2099.4
NC_009254:637952:6588356588356605261692Burkholderia vietnamiensis G4 chromosome 3, complete sequencephage integrase family protein5e-2099.4
NC_010682:1593108:1597420159742015995342115Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein1e-1997.8
NC_014394:942015:9603699603699623631995Gallionella capsiferriformans ES-2 chromosome, complete genomeintegrase family protein2e-1687.8
NC_014540:2933853:2935532293553229367011170Burkholderia sp. CCGE1003 chromosome 2, complete sequenceintegrase family protein4e-1686.7
NC_017986:5797044:5807491580749158086001110Pseudomonas putida ND6 chromosome, complete genomeintegrase/recombinase9e-1272
NC_012723:71637:9549495494973351842Burkholderia glumae BGR1 plasmid bglu_1p, complete sequencePhage integrase family protein3e-0757
NC_010801:550270:5524335524335539051473Burkholderia multivorans ATCC 17616 chromosome 3, completetyrosine recombinase9e-0755.5
NC_009256:1782000:1783025178302517845061482Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage integrase family protein1e-0654.7
NC_009254:637952:6512376512376527181482Burkholderia vietnamiensis G4 chromosome 3, complete sequencephage integrase family protein1e-0654.7
NC_007404:1388049:139955713995571400129573Thiobacillus denitrificans ATCC 25259, complete genomeprobable integrase/recombinase protein2e-0654.7
NC_016626:1751159:1768345176834517702941950Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative integrase5e-0652.8