Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:3193490:3209245 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3209245, End: 3210549, Length: 1305

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:5833819:5841338584133858426571320Pseudomonas putida ND6 chromosome, complete genomesite-specific recombinase, phage integrase family9e-170596
NC_020829:2754203:2762736276273627639051170Pseudomonas denitrificans ATCC 13867, complete genomesite-specific recombinase, phage integrase family protein6e-152537
NC_004578:3193490:3213297321329732146311335Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family1e-116420
NC_007482:607365:6205506205506217611212Pseudoalteromonas haloplanktis TAC125 chromosome II, completeputative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 28e-53208
NC_009092:2282437:2293640229364022949111272Shewanella loihica PV-4, complete genomephage integrase family protein2e-40167
NC_016745:2229271:2237163223716322384521290Oceanimonas sp. GK1 chromosome, complete genomeintegrase family protein6e-35149
NC_014541:2122788:2128465212846521297631299Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein3e-34146
NC_017986:5833819:584275258427525843708957Pseudomonas putida ND6 chromosome, complete genomeputative phage integrase1e-33144
NC_008577:2511326:2527441252744125287361296Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein4e-32139
NC_009052:2512373:2543022254302225443171296Shewanella baltica OS155, complete genomephage integrase family protein2e-31136
NC_009348:2125698:2153762215376221550391278Aeromonas salmonicida subsp. salmonicida A449, complete genomephage integrase6e-31135
NC_016901:2594942:2599191259919126004861296Shewanella baltica OS678 chromosome, complete genomeintegrase family protein6e-30132
NC_009997:2635025:2639274263927426405691296Shewanella baltica OS195, complete genomeintegrase family protein6e-30132
NC_010678:642769:6427696427696439621194Ralstonia pickettii 12J chromosome 2, complete sequenceintegrase family protein2e-29130
NC_011662:2402408:2409839240983924110231185Thauera sp. MZ1T, complete genomeintegrase family protein6e-28125
NC_010512:1015557:1029161102916110309031743Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceintegrase family protein7e-25115
NC_015137:2582467:2587301258730125890131713Burkholderia sp. CCGE1001 chromosome 2, complete sequencehypothetical protein2e-24113
NC_016616:2768053:2776311277631127774891179Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase XerD2e-24113
NC_007510:1959883:2009443200944320112091767Burkholderia sp. 383 chromosome 1, complete sequencePhage integrase9e-24111
NC_008061:2582000:2589264258926425909611698Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencephage integrase4e-23109
NC_008543:2666846:2676028267602826777251698Burkholderia cenocepacia HI2424 chromosome 2, complete sequencephage integrase family protein4e-23109
NC_010515:1678487:1720173172017317218641692Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceintegrase family protein3e-23109
NC_010801:421906:4249834249834261251143Burkholderia multivorans ATCC 17616 chromosome 3, completetyrosine recombinase4e-22105
NC_007434:2290934:2293652229365222953311680Burkholderia pseudomallei 1710b chromosome I, complete sequencephage integrase family protein5e-22105
NC_016626:1825845:1859727185972718609681242Burkholderia sp. YI23 plasmid byi_1p, complete sequenceintegrase family protein9e-22105
NC_015383:368500:3828523828523840241173Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequenceintegrase family protein2e-21103
NC_009254:745706:7473067473067489971692Burkholderia vietnamiensis G4 chromosome 3, complete sequencephage integrase family protein8e-21102
NC_008060:1346581:1350978135097813525011524Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase8e-21102
NC_008544:818730:8313328313328330111680Burkholderia cenocepacia HI2424 chromosome 3, complete sequencephage integrase family protein6e-21102
NC_014118:987889:1035939103593910376931755Burkholderia sp. CCGE1002 chromosome chromosome 2, completeintegrase family protein1e-20101
NC_010682:1913941:1915633191563319173331701Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein1e-20101
NC_013193:38918:4192241922431151194Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmidhypothetical protein4e-1996.3
NC_009254:637952:6588356588356605261692Burkholderia vietnamiensis G4 chromosome 3, complete sequencephage integrase family protein9e-1891.7
NC_007337:10464:1046410464121551692Ralstonia eutropha JMP134 plasmid 1, complete sequencephage integrase9e-1891.7
NC_014394:942015:9603699603699623631995Gallionella capsiferriformans ES-2 chromosome, complete genomeintegrase family protein5e-1685.9
NC_014540:2933853:2935532293553229367011170Burkholderia sp. CCGE1003 chromosome 2, complete sequenceintegrase family protein8e-1685.1
NC_010682:1593108:1597420159742015995342115Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein4e-1376.3
NC_017986:5797044:5807491580749158086001110Pseudomonas putida ND6 chromosome, complete genomeintegrase/recombinase1e-0964.7
NC_016002:2453919:2459603245960324607061104Pseudogulbenkiania sp. NH8B, complete genomephage integrase family protein9e-0858.5
NC_008741:81914:9316593165941961032Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01,phage integrase family protein3e-0757
NC_013939:1812259:181857918185791819487909Deferribacter desulfuricans SSM1, complete genometyrosine recombinase3e-0757