Pre_GI: BLASTP Hits

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Query: NC_004578:2671508:2681681 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2681681, End: 2683111, Length: 1431

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:4796436:4811216481121648126611446Streptosporangium roseum DSM 43021, complete genomeCapK domain-containing protein3e-106385
NC_012214:124337:1328071328071341891383Erwinia pyrifoliae Ep1/96, complete genomeCapK protein8e-78291
NC_009051:657000:6658626658626671421281Methanoculleus marisnigri JR1, complete genomeCapK related-protein2e-26120
NC_014254:18193:3767837678390391362Methanohalobium evestigatum Z-7303 plasmid pMETEV01, completecapsular polysaccharide biosynthesis protein7e-25115
NC_019977:1456366:1469437146943714707231287Methanomethylovorans hollandica DSM 15978, complete genomecoenzyme F390 synthetase7e-22105
NC_012108:2220983:2249625224962522510011377Desulfobacterium autotrophicum HRM2, complete genomeputative coenzyme F390 synthetase FtsA4e-21103
NC_015216:808000:8247848247848261061323Methanobacterium sp. AL-21 chromosome, complete genomecapsular polysaccharide biosynthesis protein2e-21103
NC_003552:1259356:1272835127283512741721338Methanosarcina acetivorans C2A, complete genomecapsular polysaccharide biosynthesis protein1e-20101
NC_007298:2568851:2601271260127126026261356Dechloromonas aromatica RCB, complete genomepossible CapK protein7e-2099
NC_017506:1996652:2017789201778920191531365Marinobacter adhaerens HP15 chromosome, complete genomecoenzyme F390 synthetase-like protein2e-1997.4
NC_012918:2850755:2867642286764228690181377Geobacter sp. M21 chromosome, complete genomecoenzyme F390 synthetase9e-1892
NC_002505:980595:9865979865979879371341Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completecapK protein, putative8e-1892
NC_012578:936000:9440129440129453521341Vibrio cholerae M66-2 chromosome I, complete sequenceputative capK protein8e-1892
NC_012582:997268:1008754100875410100941341Vibrio cholerae O395 chromosome chromosome I, complete sequenceputative capK protein8e-1892
NC_016445:452100:4635904635904649301341Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completephenylacetate-CoA ligase8e-1892
NC_016944:975725:9836189836189849581341Vibrio cholerae IEC224 chromosome I, complete sequencephenylacetate-CoA ligase8e-1892
NC_009457:471337:4773354773354786751341Vibrio cholerae O395 chromosome 2, complete sequencecapK protein8e-1892
NC_014392:1935130:1943128194312819445431416Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomecoenzyme F390 synthetase-like protein2e-1790.5
NC_018876:2604055:2617254261725426185581305Methanolobus psychrophilus R15 chromosome, complete genomephenylacetate-CoA ligase8e-1788.6
NC_017270:885179:8916938916938928471155Vibrio cholerae LMA3984-4 chromosome chromosome I, completeCapK protein, putative1e-1688.2
NC_014935:1704816:1716499171649917178031305Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeamp-dependent synthetase and ligase2e-1687.8
NC_017272:921193:9211939211939225271335Thermus thermophilus SG0.5JP17-16 chromosome, complete genomephenylacetate--CoA ligase2e-1687.4
NC_015633:2327500:2338518233851823398401323Vibrio anguillarum 775 chromosome chromosome I, complete sequenceCapK5e-1686.3
NC_014972:322056:3620943620943633891296Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein1e-1585.1
NC_011297:415760:4297774297774311471371Dictyoglomus thermophilum H-6-12, complete genomecapsular polysaccharide biosynthesis protein1e-1584.7
NC_009454:358044:3683923683923697981407Pelotomaculum thermopropionicum SI, complete genomecoenzyme F390 synthetase1e-1584.7
NC_014253:575360:5820365820365833371302Methanohalobium evestigatum Z-7303 chromosome, complete genomePhenylacetate--CoA ligase2e-1584
NC_002570:207555:2130302130302143671338Bacillus halodurans C-125, complete genomephenylacetyl-CoA ligase in the phenylacetic acid catabolic pathway3e-1584
NC_007759:415456:4336014336014350731473Syntrophus aciditrophicus SB, complete genomecoenzyme F390 Synthetase / phenylacetate-coenzyme A ligase2e-1480.9
NC_002939:2124642:2144092214409221454531362Geobacter sulfurreducens PCA, complete genomecapK related-protein2e-1480.9
NC_002939:2124642:2137420213742021387601341Geobacter sulfurreducens PCA, complete genomecapK related-protein3e-1480.5
NC_010612:103081:1306391306391320271389Mycobacterium marinum M, complete genomehypothetical protein2e-1480.5
NC_020409:363114:3655483655483668521305Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePhenylacetate-coenzyme A ligase6e-1479.3
NC_020133:77341:921469214693069924Mycobacterium liflandii 128FXT, complete genomeCoenzyme F390 synthetase1e-1378.2
NC_015499:1493500:1504803150480315061101308Thermodesulfobium narugense DSM 14796 chromosome, complete genomePhenylacetate--CoA ligase8e-1375.5
NC_018868:1960542:1970273197027319716581386Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomecoenzyme F390 synthetase2e-1274.7
NC_013741:302415:3191133191133203631251Archaeoglobus profundus DSM 5631, complete genomePhenylacetate--CoA ligase3e-1273.9
NC_007645:2779381:2809406280940628106411236Hahella chejuensis KCTC 2396, complete genomeCoenzyme F390 synthetase4e-1273.2
NC_017955:1611037:1630447163044716318831437Modestobacter marinus, complete genomecoenzyme F390 synthetase2e-1170.9
NC_016112:3103716:312534731253473125985639Methylomicrobium alcaliphilum chromosome, complete genomeCapK protein (fragment)2e-1170.9
NC_014377:1943476:1943476194347619448491374Thermosediminibacter oceani DSM 16646 chromosome, complete genomeAMP-dependent synthetase and ligase2e-1170.5
NC_015499:1493500:1500640150064015019441305Thermodesulfobium narugense DSM 14796 chromosome, complete genomePhenylacetate--CoA ligase9e-1168.6
NC_014722:1084616:1084616108461610859231308Burkholderia rhizoxinica HKI 454, complete genomeCoenzyme F390 Synthetase / phenylacetate-coenzyme A ligase2e-1067.8
NC_016818:633750:6576876576876591201434Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completecoenzyme F390 synthetase2e-1067.4
NC_015733:2963548:2985941298594129872601320Pseudomonas putida S16 chromosome, complete genomephenylacetate-CoA ligase3e-1067
NC_011894:3475775:3482117348211734834481332Methylobacterium nodulans ORS 2060, complete genomephenylacetate-CoA ligase4e-1066.6
NC_003454:339345:3380743380743393481275Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeCoenzyme F390 synthetase5e-1066.2
NC_013223:448343:4745994745994759991401Desulfohalobium retbaense DSM 5692, complete genomeCoenzyme F390 synthetase-like protein5e-1066.2
NC_015656:4850833:4865121486512148665211401Frankia symbiont of Datisca glomerata chromosome, complete genomeAMP-dependent synthetase and ligase7e-1065.9
NC_018876:516220:5232725232725246781407Methanolobus psychrophilus R15 chromosome, complete genomehypothetical protein7e-1065.9
NC_018691:896464:9006069006069019011296Alcanivorax dieselolei B5 chromosome, complete genomePhenylacetate-CoA ligase9e-1065.5
NC_016027:2512297:2534465253446525357931329Gluconacetobacter xylinus NBRC 3288, complete genomephenylacetate-CoA ligase4e-0963.5
NC_008009:4479648:4483709448370944851361428Acidobacteria bacterium Ellin345, complete genomeCapK protein, putative4e-0963.2
NC_008699:2260606:2277546227754622789641419Nocardioides sp. JS614, complete genomePhenylacetate--CoA ligase8e-0962.4
NC_016514:2647984:2674645267464526759311287Enterobacter cloacae EcWSU1 chromosome, complete genomeAdenylate-Forming6e-0962.4
NC_015571:411156:4223024223024236361335Porphyromonas gingivalis TDC60, complete genomeputative coenzyme F390 synthetase3e-0860.5
NC_015500:2329957:2352706235270623540281323Treponema brennaborense DSM 12168 chromosome, complete genomePhenylacetate--CoA ligase3e-0860.5
NC_013440:1698047:1706983170698317082241242Haliangium ochraceum DSM 14365, complete genomeCoenzyme F390 synthetase-like protein3e-0757
NC_012914:5938566:5960149596014959614111263Paenibacillus sp. JDR-2, complete genomecoenzyme F390 synthetase-like protein6e-0756.2
NC_009783:670449:6849236849236861761254Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein7e-0755.8
NC_012654:18893:3274132741340061266Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequencephenylacetate--CoA ligase9e-0755.5