Pre_GI: BLASTP Hits

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Query: NC_004578:20738:64066 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 64066, End: 65970, Length: 1905

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005241:157741:1767081767081786091902Ralstonia eutropha H16 megaplasmid pHG1, complete sequencehelicase superfamily protein I0684
NC_015563:4629436:4641223464122346431181896Delftia sp. Cs1-4 chromosome, complete genomeUvrD/REP helicase2e-128459
NC_010554:2646806:2662014266201426639061893Proteus mirabilis HI4320, complete genomeplasmid-related helicase2e-120433
NC_009429:401500:4116594116594135121854Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein4e-102372
NC_007912:231817:2505152505152523591845Saccharophagus degradans 2-40, complete genomeUvrD/REP helicase family protein5e-96352
NC_014376:3732547:3757360375736037592191860Clostridium saccharolyticum WM1 chromosome, complete genomeUvrD/REP helicase2e-93343
NC_012880:3421500:3440502344050234423491848Dickeya dadantii Ech703, complete genomeUvrD/REP helicase9e-76285
NC_008346:584305:5929635929635942281266Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeUvrD/REP helicase family protein5e-73276
NC_013166:32474:6953369533713651833Kangiella koreensis DSM 16069, complete genomeUvrD/REP helicase8e-70265
NC_010682:3313944:3326681332668133283541674Ralstonia pickettii 12J chromosome 1, complete sequenceUvrD/REP helicase2e-69264
NC_008757:151862:1666791666791683431665Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeUvrD/REP helicase1e-62241
NC_009442:908507:9070069070069085501545Streptococcus suis 05ZYH33 chromosome, complete genomeDNA helicase2e-61237
NC_017506:1222000:1228148122814812298121665Marinobacter adhaerens HP15 chromosome, complete genomeDNA helicase5e-55216
NC_012731:560199:5707435707435724161674Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative helicase2e-54214
NC_008209:3313087:3313087331308733147361650Roseobacter denitrificans OCh 114, complete genomeUvrD/REP helicase, putative4e-40166
NC_009665:5072413:5104920510492051065901671Shewanella baltica OS185 chromosome, complete genomeUvrD/REP helicase8e-38159
NC_009997:5188221:5220834522083452225041671Shewanella baltica OS195, complete genomeUvrD/REP helicase2e-37157
NC_016901:5130147:5161456516145651631261671Shewanella baltica OS678 chromosome, complete genomeUvrD/REP helicase2e-37157
NC_002947:4167500:4184219418421941858771659Pseudomonas putida KT2440, complete genomehelicase, putative1e-27125
NC_007974:785216:799799799799800044246Ralstonia metallidurans CH34 chromosome 2, complete sequenceUvrD/REP helicase family protein7e-25115
NC_018876:168207:1682071682071712693063Methanolobus psychrophilus R15 chromosome, complete genomeUvrD/REP helicase4e-1790.5
NC_009012:3354477:3399024339902434012492226Clostridium thermocellum ATCC 27405, complete genomeATP-dependent DNA helicase PcrA1e-1688.6
NC_007912:231817:2322972322972343152019Saccharophagus degradans 2-40, complete genomeATP-dependent DNA helicase Rep1e-1585.5
NC_015161:927152:9336859336859359882304Deinococcus proteolyticus MRP chromosome, complete genomeUvrD/REP helicase2e-1481.6
NC_011297:1224749:1231122123112212329991878Dictyoglomus thermophilum H-6-12, complete genomeATP-dependent DNA helicase PcrA3e-1480.9
NC_015556:130437:1304371304371326382202Pseudomonas fulva 12-X chromosome, complete genomeUvrD/REP helicase1e-1275.1
NC_007645:713930:7350657350657372302166Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase5e-1273.2
NC_019896:2805098:2819463281946328217422280Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein6e-1273.2
NC_009256:176403:1774401774401795272088Burkholderia vietnamiensis G4 chromosome 1, complete sequenceUvrD/REP helicase6e-1273.2
NC_010718:3039434:3039434303943430416982265Natranaerobius thermophilus JW/NM-WN-LF, complete genomeUvrD/REP helicase6e-1273.2
NC_011661:1411383:1411383141138314132601878Dictyoglomus turgidum DSM 6724, complete genomeUvrD/REP helicase7e-1272.8
NC_017200:345502:3455023455023477512250Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ATP-dependent DNA helicase PcrA9e-1272.4
NC_009484:857384:8840898840898860081920Acidiphilium cryptum JF-5 chromosome, complete genomeUvrD/REP helicase1e-1172.4
NC_016779:312500:3133533133533156142262Bacillus cereus F837/76 chromosome, complete genomeATP-dependent DNA helicase UvrD/PcrA1e-1172
NC_010278:1467146:1468739146873914709372199Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA-dependent helicase II1e-1171.6
NC_002488:45219:4680546805489912187Xylella fastidiosa 9a5c, complete genomeDNA helicase II2e-1171.2
NC_008060:3155133:3199939319993932020262088Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceUvrD/REP helicase2e-1171.2
NC_008781:330919:3478083478083499372130Polaromonas naphthalenivorans CJ2, complete genomeUvrD/REP helicase5e-1170.1
NC_021171:358456:3625633625633647762214Bacillus sp. 1NLA3E, complete genomeATP-dependent DNA helicase5e-1170.1
NC_010513:44886:4643546435486062172Xylella fastidiosa M12 chromosome, complete genomeDNA-dependent helicase II1e-1068.9
NC_013204:1135397:1155067115506711575082442Eggerthella lenta DSM 2243, complete genomeUvrD/REP helicase2e-1068.6
NC_013223:2279869:2304961230496123071052145Desulfohalobium retbaense DSM 5692, complete genomeUvrD/REP helicase2e-1068.6
NC_007651:3719191:3719191371919137217372547Burkholderia thailandensis E264 chromosome I, complete sequenceATP-dependent DNA helicase Rep2e-1068.2
NC_007963:3553678:3568340356834035703882049Chromohalobacter salexigens DSM 3043, complete genomeATP-dependent DNA helicase Rep5e-1066.6
NC_010634:166900:1881581881581901792022Yersinia pseudotuberculosis PB1/+, complete genomeATP-dependent DNA helicase Rep6e-1066.6
NC_006155:172313:1935641935641955852022Yersinia pseudotuberculosis IP 32953, complete genomeATP-dependent DNA helicase Rep6e-1066.2
NC_012880:3125261:3145876314587631479332058Dickeya dadantii Ech703, complete genomeUvrD/REP helicase1e-0965.5
NC_018515:3169973:3177608317760831798482241Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent DNA helicase PcrA1e-0965.5
NC_002505:168532:1942141942141963852172Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeDNA helicase II1e-0965.5
NC_012668:442601:4426014426014447722172Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA-dependent helicase II1e-0965.5
NC_016445:2593800:2619482261948226216532172Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-dependent helicase II1e-0965.5
NC_016944:168530:1942241942241963952172Vibrio cholerae IEC224 chromosome I, complete sequenceDNA-dependent helicase II1e-0965.5
NC_017080:1981788:1981788198178819841962409Phycisphaera mikurensis NBRC 102666, complete genomeATP-dependent DNA helicase PcrA3e-0964.3
NC_014033:1152994:1154615115461511570442430Prevotella ruminicola 23 chromosome, complete genomeputative ATP-dependent DNA helicase PcrA3e-0964.3
NC_012668:442601:4725634725634745782016Vibrio cholerae MJ-1236 chromosome 1, complete sequenceATP-dependent DNA helicase Rep5e-0963.2
NC_014394:942015:9649409649409666371698Gallionella capsiferriformans ES-2 chromosome, complete genomeUvrD/REP helicase1e-0862.4
NC_009483:1551040:1564229156422915662652037Geobacter uraniireducens Rf4 chromosome, complete genomeUvrD/REP helicase3e-0860.8
NC_014614:260782:2675712675712711253555Clostridium sticklandii, complete genomeATP-dependent nuclease, subunit A7e-0859.7
NC_012438:192065:1930181930181951202103Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeATP-dependent DNA helicase PcrA6e-0859.7
NC_014394:1554373:1566790156679015719135124Gallionella capsiferriformans ES-2 chromosome, complete genomeATP-dependent DNA helicase, RecQ family2e-0758.2
NC_014924:3065430:3065430306543030676102181Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeDNA helicase II3e-0757.4
NC_013665:918313:9634339634339666963264Methanocella paludicola SANAE, complete genomeputative ATP-dependent DNA helicase3e-0757.4
NC_014507:2319842:2335593233559323386073015Methanoplanus petrolearius DSM 11571 chromosome, complete genomeUvrD/REP helicase3e-0757.4
NC_011901:625712:6616286616286636432016Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeATP-dependent DNA helicase Rep5e-0757
NC_012811:317308:3394763394763414762001Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative ATP-dependent DNA helicase1e-0655.1
NC_008463:2467219:2480409248040924855325124Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative DNA helicase2e-0654.7
NC_004578:5336773:5384766538476653874892724Pseudomonas syringae pv. tomato str. DC3000, complete genomeUvrD/REP helicase family protein5e-0653.5
NC_008209:2367500:2369250236925023720002751Roseobacter denitrificans OCh 114, complete genomehelicase IV1e-0552.4