Pre_GI: BLASTP Hits

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Query: NC_004547:611178:619034 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 619034, End: 620236, Length: 1203

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein0638
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF7e-109394
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-107390
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein2e-106386
NC_010102:4557037:4574291457429145753941104Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-103377
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein1e-88327
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein2e-78293
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein2e-78293
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome4e-71268
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)4e-71268
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein6e-71268
NC_004337:3049118:305931630593163060077762Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-68258
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein4e-68258
NC_016822:3420826:342900434290043429765762Shigella sonnei 53G, complete genomeputative plasmid transfer protein9e-68257
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein2e-61236
NC_016945:666000:6841916841916853511161Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein5e-41168
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein5e-36152
NC_009456:557962:5589135589135600791167Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein9e-32138
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein9e-32138
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein9e-32138
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein3e-29130
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein5e-24112
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein2e-20100