Pre_GI: BLASTP Hits

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Query: NC_004463:9031331:9047328 Bradyrhizobium japonicum USDA 110, complete genome

Start: 9047328, End: 9048755, Length: 1428

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:4365935:4375251437525143766691419Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein0647
NC_008751:1043269:1083858108385810860742217Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeplasmid/phage primase, P4 family7e-143507
NC_014365:2888897:2892843289284328950922250Desulfarculus baarsii DSM 2075 chromosome, complete genomephage/plasmid primase, P4 family2e-142505
NC_014365:2843126:2849838284983828520722235Desulfarculus baarsii DSM 2075 chromosome, complete genomephage/plasmid primase, P4 family1e-140500
NC_016027:1776300:1779302177930217807201419Gluconacetobacter xylinus NBRC 3288, complete genomephage/plasmid primase P43e-138492
NC_011757:2030631:2046753204675320482101458Methylobacterium chloromethanicum CM4, complete genomephage/plasmid primase, P4 family2e-124446
NC_015422:2078618:2103438210343821057382301Alicycliphilus denitrificans K601 chromosome, complete genomephage/plasmid primase, P4 family2e-111403
NC_010511:1273610:1292577129257712939801404Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein2e-110399
NC_014311:198542:2200012200012222802280Ralstonia solanacearum PSI07 chromosome, complete genomeDNA primase, phage/plasmid2e-108392
NC_003295:856775:8796328796328819292298Ralstonia solanacearum GMI1000, complete genomehypothetical protein7e-107387
NC_009256:3601080:3601080360108036034072328Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein6e-103374
NC_007645:5801295:5801295580129558035712277Hahella chejuensis KCTC 2396, complete genomepredicted ATPase8e-102371
NC_014923:4017575:4036155403615540375101356Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completephage/plasmid primase, P4 family3e-93342
NC_015660:1076159:1089446108944610917432298Geobacillus thermoglucosidasius C56-YS93 chromosome, completephage/plasmid primase, P4 family7e-71268
NC_015578:2026741:2039179203917920405731395Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein2e-70267
NC_010814:3332088:3335396333539633374832088Geobacter lovleyi SZ, complete genomephage/plasmid primase, P4 family8e-68258
NC_009012:2356500:2366420236642023685732154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family1e-67258
NC_009012:3354477:3383076338307633852292154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family2e-66253
NC_009012:3354477:3362822336282233649752154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family5e-66252
NC_006322:3418268:3458909345890934613262418Bacillus licheniformis ATCC 14580, complete genomehypothetical protein7e-66251
NC_006270:3418097:3458738345873834611552418Bacillus licheniformis ATCC 14580, complete genomehypothetical phagelike protein7e-66251
NC_015578:1940097:1975443197544319768791437Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein3e-64246
NC_012796:1645856:1656031165603116574791449Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-62241
NC_015428:1544728:1579545157954515818482304Lactobacillus buchneri NRRL B-30929 chromosome, complete genomephage/plasmid primase, P4 family2e-60233
NC_016026:296951:3065803065803088382259Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage/plasmid primase, P4 family4e-59229
NC_013768:1260317:1273256127325612755442289Listeria monocytogenes 08-5923, complete genomehypothetical protein5e-58225
NC_013766:1293144:1306552130655213088402289Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein5e-58225
NC_003903:167825:1867101867101882301521Streptomyces coelicolor A3(2) plasmid SCP1, complete sequenceputative dna primase/helicase2e-57223
NC_003212:2592600:2610169261016926124422274Listeria innocua Clip11262, complete genomehypothetical protein2e-57223
NC_010610:535790:5463765463765486852310Lactobacillus fermentum IFO 3956, complete genomephage primase5e-57222
NC_016627:1723104:1741360174136017436002241Clostridium clariflavum DSM 19732 chromosome, complete genomephage/plasmid primase, P4 family, C-terminal domain protein6e-57222
NC_008060:476861:4895804895804918202241Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencePhage-plasmid primase P4-like4e-53209
NC_008542:1021848:1034227103422710364672241Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage/plasmid primase, P4 family4e-53209
NC_014727:1220869:1264933126493312672872355Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA-polymerase or DNA-primase1e-52207
NC_015726:3452232:3461482346148234638632382Cupriavidus necator N-1 chromosome 1, complete sequencephage/plasmid primase, P4 family5e-52205
NC_010002:3753000:3753413375341337559862574Delftia acidovorans SPH-1, complete genomephage/plasmid primase, P4 family1e-48194
NC_012796:77071:1010401010401028601821Desulfovibrio magneticus RS-1, complete genomehypothetical protein7e-48191
NC_011663:2813033:2817770281777028204722703Shewanella baltica OS223 chromosome, complete genomeP4 family phage/plasmid primase1e-46187
NC_010162:5651746:5663639566363956650151377Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-46187
NC_003888:6103534:6111554611155461138242271Streptomyces coelicolor A3(2), complete genomeATP binding protein5e-43176
NC_012988:1777618:1794199179419917964302232Methylobacterium extorquens DM4, complete genomeP4 family phage/plasmid primase7e-42172
NC_010172:5447189:5465724546572454678172094Methylobacterium extorquens PA1, complete genomephage/plasmid primase, P4 family2e-41171
NC_015697:468234:4751084751084773632256Lactobacillus reuteri SD2112 chromosome, complete genomeP4 family prophage LambdaSa04 protein2e-41170
NC_009706:3291330:3302086330208633043952310Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein5e-41169
NC_011837:3226500:3233588323358832358972310Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-41169
NC_013740:1218429:1217314121731412184321119Acidaminococcus fermentans DSM 20731, complete genomephage/plasmid primase, P4 family3e-41169
NC_016077:1944000:1944131194413119464192289Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein7e-41168
NC_008530:1454118:1464863146486314672292367Lactobacillus gasseri ATCC 33323, complete genomePhage DNA polymerase, ATPase domain5e-40166
NC_015697:506494:5161025161025183572256Lactobacillus reuteri SD2112 chromosome, complete genomeP4 family prophage LambdaSa04 protein5e-40165
NC_009464:931647:9434179434179460202604Uncultured methanogenic archaeon RC-I, complete genomehypothetical phage-like protein6e-39162
NC_007432:654904:6685616685616708462286Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, DNA primase, P4 family5e-39162
NC_014393:4775452:4816395481639548186622268Clostridium cellulovorans 743B chromosome, complete genomephage/plasmid primase, P4 family4e-39162
NC_002936:67896:6789667896701692274Dehalococcoides ethenogenes 195, complete genomephage/plasmid DNA primase, putative6e-38159
NC_021064:1211480:121722612172261218119894Propionibacterium avidum 44067, complete genomephage-associated protein5e-37155
NC_012796:4693500:4745792474579247472281437Desulfovibrio magneticus RS-1, complete genomehypothetical protein5e-34145
NC_008009:4421992:4428141442814144305402400Acidobacteria bacterium Ellin345, complete genomeprimase P4-like protein7e-31135
NC_014972:210500:2121342121342137501617Desulfobulbus propionicus DSM 2032 chromosome, complete genomephage/plasmid primase, P4 family4e-29129
NC_006138:1735723:1751165175116517529461782Desulfotalea psychrophila LSv54, complete genomehypothetical protein4e-25116
NC_013665:1766158:1779852177985217811711320Methanocella paludicola SANAE, complete genomehypothetical protein1e-23111
NC_014774:171500:2032292032292052892061Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeP4 family phage/plasmid primase2e-23110
NC_012985:1191125:1223290122329012256592370Candidatus Liberibacter asiaticus str. psy62, complete genomeP4 family phage/plasmid primase3e-22106
NC_019897:3810000:3853817385381738559282112Thermobacillus composti KWC4 chromosome, complete genomephage/plasmid primase, P4 family, C-terminal domain-containing protein9e-22105
NC_007973:2888824:2896361289636128982591899Ralstonia metallidurans CH34 chromosome 1, complete sequencePhage/plasmid primase P4-like protein4e-21103
NC_014774:1210004:1244100124410012451011002Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeP4 family phage/plasmid primase3e-1997.1
NC_014639:3520874:3539399353939935412251827Bacillus atrophaeus 1942 chromosome, complete genomeP4 family phage/plasmid primase4e-1996.3
CP002207:3520874:3539399353939935412251827Bacillus atrophaeus 1942, complete genomeP4 family phage/plasmid primase4e-1996.3
NC_016625:1259778:1263919126391912649351017Burkholderia sp. YI23 chromosome 2, complete sequenceputative primase/helicase protein8e-1995.5
NC_020054:465413:4699164699164713911476Fibrella aestuarina BUZ 2 drat genomeP4 family phage/plasmid primase5e-1892.8
NC_002607:169721:1809161809161834892574Halobacterium sp. NRC-1, complete genomehypothetical protein6e-1789
NC_013730:3729626:3754581375458137560411461Spirosoma linguale DSM 74, complete genomephage/plasmid primase, P4 family2e-1481.3
NC_006086:35599:4481744817472012385Streptococcus pyogenes MGAS10394, complete genomevirulence-associated protein E9e-1478.6
NC_004606:446427:4556454556454580292385Streptococcus pyogenes SSI-1, complete genomeputative DNA primase (phage associated)9e-1478.6
NC_004070:1431146:1438856143885614412402385Streptococcus pyogenes MGAS315, complete genomeputative DNA primase/helicase - phage associated9e-1478.6
NC_021177:6127431:6135060613506061372612202Streptomyces fulvissimus DSM 40593, complete genomeATP binding protein2e-1377.8
NC_009332:1050353:1058083105808310604672385Streptococcus pyogenes str. Manfredo chromosome, complete genomephage DNA primase/helicase protein4e-1376.6
NC_011375:749693:7590757590757614592385Streptococcus pyogenes NZ131 chromosome, complete genomeDNA primase/helicase-phage associated4e-1376.6
NC_013929:5952380:5955955595595559574121458Streptomyces scabiei 87.22 chromosome, complete genomeNTP-binding protein6e-1375.9
NC_012471:2080902:2093767209376720961512385Streptococcus equi subsp. equi 4047, complete genomephage DNA primase/helicase protein2e-1274.3
NC_014762:2428721:2439390243939024407811392Sulfuricurvum kujiense DSM 16994 chromosome, complete genomephage/plasmid primase, p4 family4e-1273.2
NC_002937:2263763:2286231228623122887232493Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeprimase, putative6e-1272.8
NC_008023:1426687:1432362143236214347462385Streptococcus pyogenes MGAS2096, complete genomeDNA primase5e-1272.8
NC_007297:1406796:1414019141401914164032385Streptococcus pyogenes MGAS5005, complete genomeDNA primase5e-1272.8
NC_008021:1401249:1408472140847214108562385Streptococcus pyogenes MGAS9429, complete genomeDNA primase5e-1272.8
NC_015703:5649260:5655640565564056572231584Runella slithyformis DSM 19594 chromosome, complete genomephage/plasmid primase, P4 family9e-1272
NC_014253:431942:4420874420874437241638Methanohalobium evestigatum Z-7303 chromosome, complete genomephage/plasmid primase2e-1171.2
NC_015676:794639:8056708056708078322163Methanosalsum zhilinae DSM 4017 chromosome, complete genomephage/plasmid primase, P4 family1e-1068.6
NC_012969:2136243:2192302219230221939661665Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeATPase-like protein1e-1068.2
NC_013446:4511602:4530150453015045312681119Comamonas testosteroni CNB-2, complete genomePhage/plasmid primase P4, C-terminal protein9e-1065.5
NC_003106:922773:9279469279469306542709Sulfolobus tokodaii str. 7, complete genomehypothetical protein1e-0862
NC_015275:4055148:4096380409638040976301251Clostridium lentocellum DSM 5427 chromosome, complete genomeBifunctional DNA primase/polymerase9e-0858.5
NC_008942:1706191:1719310171931017211301821Methanocorpusculum labreanum Z, complete genomehypothetical protein1e-0758.2