Pre_GI: BLASTP Hits

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Query: NC_004432:1310322:1341227 Mycoplasma penetrans HF-2, complete genome

Start: 1341227, End: 1341724, Length: 498

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015682:205900:242018242018242494477Thermodesulfobacterium sp. OPB45 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1271.2
NC_011899:86800:111733111733112230498Halothermothrix orenii H 168, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase9e-1269.3
NC_007519:1782067:1783902178390217851011200Desulfovibrio alaskensis G20 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1168.9
NC_002940:1065246:108655310865531087035483Haemophilus ducreyi 35000HP, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-1166.6
NC_008601:1151653:117192011719201172399480Francisella tularensis subsp. novicida U112, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1065.5
NC_014562:2563466:260747126074712607956486Pantoea vagans C9-1 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-1065.1
NC_016633:1353458:135812913581291358611483Sphaerochaeta pleomorpha str. Grapes chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-1064.3
NC_013009:122000:122009122009122515507Neorickettsia risticii str. Illinois, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-1063.9
NC_010995:2547164:255755525575552558034480Cellvibrio japonicus Ueda107, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase6e-1063.5
NC_006576:414696:416486416486416968483Synechococcus elongatus PCC 6301, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase5e-1063.5
NC_007604:1183497:120383712038371204319483Synechococcus elongatus PCC 7942, complete genomeMECDP-synthase5e-1063.5
NC_013890:53538:556085560856081474Dehalococcoides sp. GT chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-1063.2
NC_007356:51080:560695606956542474Dehalococcoides sp. CBDB1, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-1063.2
NC_016445:2938887:297179729717972972273477Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase8e-1063.2
NC_012751:1538500:155588415558841556369486Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0962
NC_009455:53000:554885548855961474Dehalococcoides sp. BAV1 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0962
NC_014624:3810163:383352138335213834003483Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-0961.6
NC_002570:126500:142151142151142624474Bacillus halodurans C-125, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0961.6
NC_004578:1719849:172296117229611723434474Pseudomonas syringae pv. tomato str. DC3000, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0961.6
NC_010382:4479464:448873244887324489208477Lysinibacillus sphaericus C3-41, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-0960.8
NC_012673:1600242:159977215997721600245474Exiguobacterium sp. AT1b, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase6e-0960.1
NC_015275:3243689:325067432506743251153480Clostridium lentocellum DSM 5427 chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase8e-0959.7
NC_012988:4387735:439113743911374391871735Methylobacterium extorquens DM4, complete genome2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase1e-0858.9
NC_015738:838715:860695860695861201507Eggerthella sp. YY7918, complete genomehypothetical protein3e-0857.8
NC_005090:1812833:1835616183561618367551140Wolinella succinogenes DSM 1740, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein3e-0857.8
NC_014632:1914500:193903819390381939517480Ilyobacter polytropus DSM 2926 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-0857.4
NC_004344:589375:614360614360614833474Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein5e-0857
NC_014378:131810:154001154001154483483Acetohalobium arabaticum DSM 5501 chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase6e-0857
NC_010468:1029471:105210410521041052583480Escherichia coli ATCC 8739, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-0856.6
NC_006347:4562242:457746945774694577948480Bacteroides fragilis YCH46, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-0756.2
NC_016776:4525065:454359445435944544073480Bacteroides fragilis 638R, complete genomeputative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-0756.2
NC_003228:4449072:446346544634654463944480Bacteroides fragilis NCTC 9343, complete genomeputative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-0755.8
NC_016632:285408:298703298703299170468Serratia symbiotica str. 'Cinara cedri' chromosome, complete2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0754.7
NC_014393:187454:204870204870205337468Clostridium cellulovorans 743B chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-0754.7
NC_008344:1364142:136536113653611365864504Nitrosomonas eutropha C91, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-0754.3
NC_019970:336472:356748356748357230483Thermoanaerobacterium thermosaccharolyticum M0795, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-0754.3
NC_006138:273237:2770292770292783301302Desulfotalea psychrophila LSv54, complete genomesimilar to IspD/IspF bifunctional enzyme (Rhodobacter capsulatus)8e-0753.1
NC_014109:27500:334653346533953489Candidatus Riesia pediculicola USDA chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-0652.4
NC_009633:4563877:460502846050284605507480Alkaliphilus metalliredigens QYMF chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-0651.6