Pre_GI: BLASTP Hits

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Query: NC_004347:4441110:4442851 Shewanella oneidensis MR-1, complete genome

Start: 4442851, End: 4443969, Length: 1119

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008800:4488112:4499404449940445005131110Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein1e-136486
NC_018868:1352000:1355293135529313563991107Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomefilamentation induced by cAMP protein fic4e-134478
NC_011901:625712:6578746578746589891116Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein1e-129463
NC_014840:76232:8651586515875911077Pantoea sp. At-9b plasmid pPAT9B03, complete sequencefilamentation induced by cAMP protein Fic7e-128457
NC_013716:3512950:3550474355047435515501077Citrobacter rodentium ICC168, complete genomehypothetical protein1e-126453
NC_015731:3658956:3664325366432536654401116Nitrosomonas sp. Is79A3 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-124446
NC_009832:622969:6277976277976288731077Serratia proteamaculans 568, complete genomefilamentation induced by cAMP protein Fic3e-124445
NC_020541:2551539:2566145256614525672691125Rhodanobacter sp. 2APBS1, complete genomehypothetical protein2e-120432
NC_014364:394899:4322194322194333041086Spirochaeta smaragdinae DSM 11293 chromosome, complete genomefilamentation induced by cAMP protein Fic2e-82306
NC_021064:1705961:1722699172269917238891191Propionibacterium avidum 44067, complete genomehypothetical protein7e-82304
NC_015554:1215401:1235142123514212362211080Alteromonas sp. SN2 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-67257
NC_008309:190550:2170202170202181411122Haemophilus somnus 129PT, complete genomehypothetical protein2e-67256
NC_015577:3589884:3612966361296636140541089Treponema azotonutricium ZAS-9 chromosome, complete genomefilamentation induced by cAMP protein Fic2e-66253
NC_015138:5342473:5349315534931553503971083Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completefilamentation induced by cAMP protein Fic1e-60234
NC_020125:1545578:1557224155722415582851062Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein2e-59229
NC_014738:167707:1741431741431752041062Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,filamentation induced by camp protein fic2e-59229
NC_017045:328031:3344673344673355281062Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,filamentation induced by camp protein fic2e-59229
NC_009707:1685381:1685381168538116864511071Campylobacter jejuni subsp. doylei 269.97 chromosome, completeputative MloA protein3e-57222
NC_013730:5538323:5544324554432455454571134Spirosoma linguale DSM 74, complete genomefilamentation induced by cAMP protein Fic4e-56218
NC_013061:4286913:4300953430095343020741122Pedobacter heparinus DSM 2366, complete genomefilamentation induced by cAMP protein Fic7e-56218
NC_009714:1329573:1345833134583313469121080Campylobacter hominis ATCC BAA-381, complete genomeMloA8e-56218
NC_007481:3167434:318181331818133182559747Pseudoalteromonas haloplanktis TAC125 chromosome I, completehypothetical protein2e-42173
NC_002939:173833:1838831838831850491167Geobacter sulfurreducens PCA, complete genomeFic family protein8e-33141
NC_019902:2306961:2306961230696123080191059Thioalkalivibrio nitratireducens DSM 14787, complete genomefilamentation induced by cAMP protein Fic7e-32138
NC_018867:1837941:1863991186399118651421152Dehalobacter sp. CF chromosome, complete genomeMloA9e-32137
NC_012969:2476318:2486685248668524878211137Methylovorus glucosetrophus SIP3-4 chromosome, complete genomefilamentation induced by cAMP protein Fic3e-30132
NC_009455:173374:1963541963541975081155Dehalococcoides sp. BAV1 chromosome, complete genomefilamentation induced by cAMP protein fic5e-30132
NC_017059:1972895:1976297197629719774811185Rhodospirillum photometricum DSM 122, complete genomeFilamentation induced by cAMP protein Fic6e-30132
NC_009051:2240480:2251990225199022531441155Methanoculleus marisnigri JR1, complete genomefilamentation induced by cAMP protein Fic8e-30131
NC_016610:1138995:1143646114364611447671122Tannerella forsythia ATCC 43037 chromosome, complete genometoxin-antitoxin system, toxin component, Fic family6e-27121
NC_006347:4378684:4393520439352043946531134Bacteroides fragilis YCH46, complete genomehypothetical protein9e-27121
NC_014836:2620871:2626075262607526272291155Desulfurispirillum indicum S5 chromosome, complete genomefilamentation induced by cAMP protein Fic2e-26120
NC_013959:2449315:2469457246945724705811125Sideroxydans lithotrophicus ES-1 chromosome, complete genomefilamentation induced by cAMP protein Fic3e-26119
NC_018750:4333064:4343077434307743442551179Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein4e-26119
NC_009523:341347:3480283480283491911164Roseiflexus sp. RS-1 chromosome, complete genomefilamentation induced by cAMP protein fic2e-25117
NC_012780:189949:1934311934311945761146Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencehypothetical protein1e-25117
NC_002608:268000:2806762806762819501275Halobacterium sp. NRC-1 plasmid pNRC200, complete sequencehypothetical protein1e-25117
NC_009051:1455183:1460449146044914615581110Methanoculleus marisnigri JR1, complete genomefilamentation induced by cAMP protein Fic1e-25117
NC_011883:2826000:2838186283818628393011116Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,filamentation induced by cAMP protein Fic1e-25117
NC_020411:90538:9632996329974411113Hydrogenobaculum sp. HO, complete genomefilamentation induced by cAMP protein Fic1e-24114
NC_015587:90539:9633096330974421113Hydrogenobaculum sp. SHO chromosome, complete genomefilamentation induced by cAMP protein Fic1e-24114
NC_015557:90503:9629496294974061113Hydrogenobaculum sp. 3684 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-24114
NC_003306:22228:3924039240404211182Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein3e-24112
NC_003064:22535:3954739547407281182Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein3e-24112
NC_014206:2941575:2941575294157529426691095Geobacillus sp. C56-T3 chromosome, complete genomefilamentation induced by cAMP protein Fic7e-24111
NC_016593:762216:7928967928967939901095Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscription regulator containing filamentation induced by cAMP family (Fic) domain and ArsR subfamily HTH domain7e-24111
NC_019907:539749:5403915403915415211131Liberibacter crescens BT-1 chromosome, complete genomehypothetical protein4e-23109
NC_017271:64293:6701067010681581149Xanthomonas campestris pv. raphani 756C chromosome, completefilamentation induced by cAMP protein fic4e-23109
NC_007086:71493:7149371493726411149Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein4e-23109
NC_003902:71494:7149471494726421149Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein4e-23109
NC_012731:560199:576695576695577066372Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomefilamentation induced by cAMP protein Fic3e-23109
NC_019962:2736815:2751080275108027522371158Natrinema pellirubrum DSM 15624, complete genomehypothetical protein1e-22107
NC_010688:69458:721757217572858684Xanthomonas campestris pv. campestris, complete genome1e-22107
NC_013966:399215:4086624086624098221161Haloferax volcanii DS2 plasmid pHV4, complete sequenceFic protein family, putative4e-22105
NC_014814:483444:4873754873754885591185Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein5e-22105
NC_014365:2810405:2820776282077628219421167Desulfarculus baarsii DSM 2075 chromosome, complete genomefilamentation induced by cAMP protein Fic5e-21102
NC_013158:1905643:1910894191089419120781185Halorhabdus utahensis DSM 12940, complete genomefilamentation induced by cAMP protein Fic2e-20100
NC_014297:1100997:110942711094271110035609Halalkalicoccus jeotgali B3 chromosome, complete genomefilamentation induced by cAMP protein Fic2e-20100
NC_013093:1213908:1223787122378712251031317Actinosynnema mirum DSM 43827, complete genomefilamentation induced by cAMP protein Fic1e-1997.4
NC_014844:511552:5216845216845228621179Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-1894
NC_004606:1107500:1109253110925311104431191Streptococcus pyogenes SSI-1, complete genomehypothetical protein1e-1584.3
NC_011059:2478075:248367824836782484103426Prosthecochloris aestuarii DSM 271, complete genomefilamentation induced by cAMP protein Fic2e-1480.1
NC_017219:2646157:268544826854482686155708Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein1e-1274.3
NC_011593:2650156:268944726894472690154708Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,Fis family transcriptional regulator1e-1274.3
NC_010612:681544:6884416884416896551215Mycobacterium marinum M, complete genomehypothetical protein4e-1272.8
NC_015730:1107840:1124793112479311258451053Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein9e-1271.6
NC_008554:4699577:4715718471571847167221005Syntrophobacter fumaroxidans MPOB, complete genomefilamentation induced by cAMP protein Fic2e-1170.5
NC_012691:2476223:249222524922252493220996Tolumonas auensis DSM 9187, complete genomefilamentation induced by cAMP protein Fic1e-1067.4
NC_008609:1976403:199746219974621998448987Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, Fis family3e-1066.6
NC_014216:1197704:121779112177911217919129Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomehypothetical protein3e-1066.6
NC_008618:1729739:1752779175277917540231245Bifidobacterium adolescentis ATCC 15703, complete genomebacterial regulatory protein4e-1066.2
NC_017218:1166844:1171768117176811730331266Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeFic/DOC family protein4e-1066.2
NC_011593:1830500:1835475183547518367401266Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,filamentation induced by cAMP protein fic3e-1066.2
NC_017219:1830353:1835265183526518365301266Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein3e-1066.2
NC_014632:1112733:1114065111406511152551191Ilyobacter polytropus DSM 2926 chromosome, complete genomefilamentation induced by cAMP protein fic7e-1065.1
NC_009051:2097271:2106187210618721074671281Methanoculleus marisnigri JR1, complete genomefilamentation induced by cAMP protein Fic1e-0964.3
NC_013174:23421:5204852048533071260Jonesia denitrificans DSM 20603, complete genomefilamentation induced by cAMP protein Fic2e-0963.5
NC_014306:4901390:4906423490642349077151293Erwinia billingiae Eb661, complete genomeFilamentation induced by cAMP protein Fic4e-0962.8
NC_008786:4579490:4582999458299945840541056Verminephrobacter eiseniae EF01-2, complete genomefilamentation induced by cAMP protein Fic9e-0961.6
NC_008463:632869:6387376387376398581122Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-0861.2
NC_003454:865368:882010882010882177168Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical cytosolic protein1e-0860.8
NC_008609:112340:1126921126921137411050Pelobacter propionicus DSM 2379, complete genomefilamentation induced by cAMP protein Fic2e-0860.8
NC_004578:568236:5711965711965723261131Pseudomonas syringae pv. tomato str. DC3000, complete genomeFic family protein3e-0860.1
NC_008347:2515921:2525126252512625262561131Maricaulis maris MCS10, complete genomefilamentation induced by cAMP protein Fic4e-0859.7
NC_014365:2888897:2890549289054928916761128Desulfarculus baarsii DSM 2075 chromosome, complete genomefilamentation induced by cAMP protein Fic7e-0858.5
NC_015588:939037:9608299608299620251197Isoptericola variabilis 225 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-0757.8
NC_015436:1758257:1773078177307817741331056Spirochaeta coccoides DSM 17374 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-0757.8
NC_013061:1052957:1057359105735910584021044Pedobacter heparinus DSM 2366, complete genomefilamentation induced by cAMP protein Fic2e-0757
NC_012918:928903:9782049782049793281125Geobacter sp. M21 chromosome, complete genomefilamentation induced by cAMP protein fic3e-0756.6
NC_008463:2467219:247927924792792480274996Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein3e-0756.6
NC_015577:3113907:3120238312023831213561119Treponema azotonutricium ZAS-9 chromosome, complete genomefilamentation induced by cAMP protein Fic4e-0756.2
NC_013204:929434:950548950548951228681Eggerthella lenta DSM 2243, complete genomefilamentation induced by cAMP protein Fic4e-0756.2
NC_009445:6621996:6649106664910666502361131Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein4e-0756.2
NC_015737:1976000:198475419847541985743990Clostridium sp. SY8519, complete genomehypothetical protein3e-0756.2
NC_013714:2294342:232022323202232321095873Bifidobacterium dentium Bd1, complete genomeFic family protein5e-0755.8
NC_020156:3157899:3174617317461731757381122Nonlabens dokdonensis DSW-6, complete genomefilamentation induced by cAMP protein Fic6e-0755.5
NC_016628:133841:1493281493281504401113Vibrio furnissii NCTC 11218 chromosome 2, complete sequencefilamentation induced by cAMP protein fic6e-0755.5
NC_002663:1988000:1996331199633119974791149Pasteurella multocida subsp. multocida str. Pm70, complete genomehypothetical protein6e-0755.5
NC_017516:1755500:1807646180764618090701425Neisseria meningitidis H44/76 chromosome, complete genomeFic family protein2e-0654.3
NC_015424:3520783:3554555355455535555831029Aeromonas veronii B565 chromosome, complete genomeFilamentation induced by cAMP protein Fic1e-0654.3
NC_017515:1744500:1805180180518018065441365Neisseria meningitidis M04-240196 chromosome, complete genomeFic family protein2e-0653.9
NC_003112:1824196:1837441183744118388051365Neisseria meningitidis MC58, complete genomehypothetical protein2e-0653.9
NC_017517:1807072:1818009181800918194211413Neisseria meningitidis M01-240355 chromosome, complete genomeFic family protein2e-0653.9
NC_012880:3982383:3999004399900440001461143Dickeya dadantii Ech703, complete genomefilamentation induced by cAMP protein Fic2e-0653.9
NC_007481:3167434:318154731815473181870324Pseudoalteromonas haloplanktis TAC125 chromosome I, completehypothetical protein2e-0653.5
NC_013093:7222000:7234196723419672352811086Actinosynnema mirum DSM 43827, complete genomehypothetical protein2e-0653.5
NC_006677:1596560:1662771166277116639041134Gluconobacter oxydans 621H, complete genomehypothetical protein3e-0653.1
NC_009997:415808:4158084158084169351128Shewanella baltica OS195, complete genomefilamentation induced by cAMP protein Fic3e-0653.1
NC_016901:414670:4146704146704157971128Shewanella baltica OS678 chromosome, complete genomefilamentation induced by cAMP protein fic3e-0653.1
NC_015458:2338437:2355979235597923571061128Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein4e-0652.8
NC_016610:2489415:249863124986312499629999Tannerella forsythia ATCC 43037 chromosome, complete genomeFic family protein7e-0652
NC_016047:4108910:4108910410891041101421233Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeFic protein family7e-0652
NC_006677:1503513:1516480151648015175831104Gluconobacter oxydans 621H, complete genomehypothetical protein8e-0652