Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3928218 Shigella flexneri 2a str. 301, complete genome

Start: 3928218, End: 3928457, Length: 240

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016632:1:8208201062243Serratia symbiotica str. 'Cinara cedri' chromosome, completeATP synthase subunit C7e-1992.4
NC_004344:1:307630763315240Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,ATP synthase subunit C2e-1684.7
NC_015572:4916430:494860249486024948886285Methylomonas methanica MC09 chromosome, complete genomeATP synthase subunit c2e-0960.8
NC_007005:6056765:608254360825436082800258Pseudomonas syringae pv. syringae B728a, complete genomeATP synthase subunit C7e-0959.3
NC_010501:5735656:576361057636105763867258Pseudomonas putida W619, complete genomeATP synthase F0, C subunit7e-0959.3
NC_007492:6372900:642784964278496428106258Pseudomonas fluorescens PfO-1, complete genomeATP synthase subunit C7e-0959.3
NC_002947:6152500:618016561801656180422258Pseudomonas putida KT2440, complete genomeATP synthase subunit C7e-0959.3
NC_009512:5920960:594910959491095949366258Pseudomonas putida F1, complete genomeATP synthase F0, C subunit7e-0959.3
NC_015733:5955467:598309259830925983349258Pseudomonas putida S16 chromosome, complete genomeF0F1 ATP synthase subunit C7e-0959.3
NC_010322:6037566:606845960684596068716258Pseudomonas putida GB-1 chromosome, complete genomeF0F1 ATP synthase subunit C7e-0959.3
NC_017986:2687588:271802327180232718280258Pseudomonas putida ND6 chromosome, complete genomeF0F1 ATP synthase subunit C7e-0959.3
NC_005966:159232:180004180004180249246Acinetobacter sp. ADP1, complete genomemembrane-bound ATP synthase, F0 sector, subunit c2e-0857.8
NC_010577:530917:533635533635533940306Xylella fastidiosa M23, complete genomeATP synthase F0, C subunit2e-0754.3
NC_004556:531000:533782533782534087306Xylella fastidiosa Temecula1, complete genomeATP synthase subunit C2e-0754.3
NC_010513:542312:545031545031545336306Xylella fastidiosa M12 chromosome, complete genomeF0F1 ATP synthase subunit C3e-0753.9
NC_002488:1099975:110645711064571106762306Xylella fastidiosa 9a5c, complete genomeATP synthase subunit C4e-0753.5
NC_015222:386000:392410392410392682273Nitrosomonas sp. AL212 chromosome, complete genomeATP synthase F0, C subunit7e-0649.3
NC_004757:230541:236771236771237043273Nitrosomonas europaea ATCC 19718, complete genomeATP synthase subunit C7e-0649.3