Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3884720 Shigella flexneri 2a str. 301, complete genome

Start: 3884720, End: 3885127, Length: 408

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015761:3698520:370164937016493702059411Salmonella bongori NCTC 12419, complete genomelipoprotein5e-59226
NC_011294:3880500:388529238852923885627336Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-49194
NC_004631:3809678:382324438232443823579336Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative lipoprotein1e-49194
NC_003198:3824187:383775438377543838089336Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative lipoprotein1e-49194
NC_011274:3799696:381327038132703813605336Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-49192
NC_010067:3753971:376765337676533767985333Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-49192
NC_003197:4005857:401063640106364010971336Salmonella typhimurium LT2, complete genomeputative outer membrane lipoprotein5e-49192
NC_016810:4027170:403194940319494032284336Salmonella enterica subsp. enterica serovar Typhimurium strputative lipoprotein5e-49192
NC_016856:4019549:402432840243284024663336Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein5e-49192
NC_016857:4025767:403195040319504032285336Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative outer membrane lipoprotein5e-49192
NC_016863:3967156:397193539719353972270336Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein5e-49192
NC_010102:3955479:395952139595213959853333Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-48191
NC_006511:3794017:379879437987943799129336Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative lipoprotein5e-48189
NC_011147:3789696:379447337944733794808336Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-48189
NC_016832:3798475:381204138120413812331291Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-45179
NC_011205:4038884:404370640437064043996291Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein6e-45179
NC_011094:3887648:389247138924713892761291Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein6e-45179
NC_016831:3779611:379409237940923794382291Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative lipoprotein4e-44176
NC_011149:3930358:393517339351733935463291Salmonella enterica subsp. enterica serovar Agona str. SL483,conserved outer membrane protein3e-44176
NC_016860:4110968:411579241157924116082291Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-44176
NC_017046:4025998:403085240308524031112261Salmonella enterica subsp. enterica serovar Typhimurium str. 798lipoprotein1e-39161
NC_012125:3941974:394647239464723946732261Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-39161
NC_011080:3976441:398129439812943981554261Salmonella enterica subsp. enterica serovar Newport str. SL254,conserved outer membrane protein1e-39161
NC_011083:4020000:402491840249184025178261Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,conserved outer membrane protein1e-39161
NC_006905:3942753:395167839516783951938261Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane lipoprotein1e-39161