Pre_GI Gene

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Host: NC_012125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:3941974 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
39417533941989237hypothetical proteinBLASTP
394197439436351662hypothetical proteinBLASTP
39437793944462684integraseQuickGO ontologyBLASTP
39446333945034402cytoplasmic proteinQuickGO ontologyBLASTP
39451393945573435heat shock chaperone IbpBQuickGO ontologyBLASTP
39456773946096420heat shock protein IbpAQuickGO ontologyBLASTP
39464723946732261hypothetical proteinBLASTP
394673439479601227ATPGTP-binding proteinQuickGO ontologyBLASTP
394808239491251044heme lyase subunitQuickGO ontologyBLASTP
39491223949679558heme lyase disulfide oxidoreductase cytocyhrome c-type biogenesisQuickGO ontologyBLASTP
394967639516071932cytochrome c-type biogenesis proteinQuickGO ontologyBLASTP
39516043952083480cytochrome c-type biogenesis protein CcmEQuickGO ontologyBLASTP
39520803952292213heme exporter protein DQuickGO ontologyBLASTP
39522893953026738heme exporter proteinQuickGO ontologyBLASTP
39530783953704627heme exporter proteinQuickGO ontologyBLASTP
39537343954306573cytochrome c biogenesis protein CcmAQuickGO ontologyBLASTP
395435739557571401cytochrome c peroxidaseQuickGO ontologyBLASTP
39559473956579633chaperone protein TorDQuickGO ontologyBLASTP
395657239591242553trimethylamine-N-oxide reductaseQuickGO ontologyBLASTP
39603713961120750DNA-binding transcriptional regulator TorRQuickGO ontologyBLASTP
396226139649482688hybrid sensory histidine kinase TorSQuickGO ontologyBLASTP
396497439663111338MFS family D-galactonate transport proteinQuickGO ontologyBLASTP