Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3883444 Shigella flexneri 2a str. 301, complete genome

Start: 3883444, End: 3884718, Length: 1275

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015761:3698520:3702061370206137032871227Salmonella bongori NCTC 12419, complete genomeATP/GTP-binding protein0665
NC_016832:3798475:3810813381081338120391227Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0659
NC_003198:3824187:3836526383652638377521227Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative ATP/GTP-binding protein0659
NC_004631:3809678:3822016382201638232421227Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative ATP/GTP-binding protein0659
NC_010102:3955479:3959855395985539610811227Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0657
NC_006905:3942753:3951940395194039531661227Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein0657
NC_012125:3941974:3946734394673439479601227Salmonella enterica subsp. enterica serovar Paratyphi C strainATP/GTP-binding protein0657
NC_010067:3753971:3766425376642537676511227Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0656
NC_011080:3976441:3981556398155639827821227Salmonella enterica subsp. enterica serovar Newport str. SL254,0656
NC_011147:3789696:3794810379481037960361227Salmonella enterica subsp. enterica serovar Paratyphi A strATP/GTP-binding protein0656
NC_006511:3794017:3799131379913138003571227Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative ATP/GTP-binding protein0656
NC_017046:4025998:4031114403111440323821269Salmonella enterica subsp. enterica serovar Typhimurium str. 798ATP/GTP-binding protein0655
NC_016831:3779611:3792864379286437940901227Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative ATP/GTP-binding protein0655
NC_011205:4038884:4043998404399840452241227Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853ATP/GTP-binding protein0655
NC_011294:3880500:3885629388562938868551227Salmonella enterica subsp. enterica serovar Enteritidis strATP/GTP-binding protein0655
NC_011094:3887648:3892763389276338939891227Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein0655
NC_011149:3930358:3935465393546539366911227Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein0654
NC_011083:4020000:4025180402518040264061227Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0654
NC_003197:4005857:4010973401097340121991227Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein0654
NC_016810:4027170:4032286403228640335121227Salmonella enterica subsp. enterica serovar Typhimurium strputative ATP/GTP-binding protein0654
NC_016856:4019549:4024665402466540258911227Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein0654
NC_016857:4025767:4032287403228740335131227Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein0654
NC_016860:4110968:4116084411608441173101227Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein0654
NC_016863:3967156:3972272397227239734981227Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein0654
NC_011274:3799696:3812042381204238132681227Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91ATP/GTP-binding protein0653
NC_016776:2913966:2913966291396629171993234Bacteroides fragilis 638R, complete genomeputative exported tricorn protease1e-0861.6
NC_003228:2929006:2929006292900629322393234Bacteroides fragilis NCTC 9343, complete genomeputative exported tricorn protease1e-0861.6