Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3797641 Shigella flexneri 2a str. 301, complete genome

Start: 3797641, End: 3798846, Length: 1206

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:49074:6310863108643131206Escherichia coli ATCC 8739, complete genomesodium/glutamate symporter0640
NC_016902:44744:7085170851720561206Escherichia coli KO11FL chromosome, complete genomesodium/glutamate symporter0639
NC_013361:4959323:4974226497422649754311206Escherichia coli O26:H11 str. 11368 chromosome, complete genomeglutamate transporter GltS0639
CP002516:44744:7085170851720561206Escherichia coli KO11, complete genomesodium/glutamate symporter0639
NC_013716:4306695:4391833439183343930381206Citrobacter rodentium ICC168, complete genomesodium/glutamate symport carrier protein (glutamate permease)2e-174612
NC_011094:3778000:3824160382416038253651206Salmonella enterica subsp. enterica serovar Schwarzengrund strsodium/glutamate symporter2e-172605
NC_015968:74124:9443494434956361203Enterobacter asburiae LF7a chromosome, complete genomesodium/glutamate symporter9e-169593
NC_013508:26348:2634826348275621215Edwardsiella tarda EIB202, complete genomeNa+/glutamate symporter3e-155548
NC_008800:36500:5155751557527711215Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,sodium/glutamate symport carrier protein2e-155548
NC_008570:3777469:3790701379070137919001200Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomesodium/glutamate symporter3e-111402
NC_013949:939695:9545939545939557921200Helicobacter mustelae 12198 chromosome, complete genomesodium/glutamate symport carrier protein1e-100366
NC_000907:1568867:1602539160253916037531215Haemophilus influenzae Rd KW20, complete genomeglutamate permease5e-89328
NC_020418:448687:4551414551414563461206Morganella morganii subsp. morganii KT, complete genomehypothetical protein1e-86320
NC_013365:92973:9297392973941781206Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeputative glutamate permease1e-86320
NC_011083:4547825:4601863460186346030681206Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,sodium/glutamate symporter1e-86320
NC_003112:96815:9681596815980291215Neisseria meningitidis MC58, complete genomesodium/glutamate symporter3e-78292
NC_017516:96879:9687996879980931215Neisseria meningitidis H44/76 chromosome, complete genomesodium/glutamate symporter3e-78292
NC_017515:76861:1028591028591040731215Neisseria meningitidis M04-240196 chromosome, complete genomesodium/glutamate symporter4e-78291
NC_017511:1883663:1883663188366318848771215Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeprotein GltS4e-74278
NC_011035:1974489:1974489197448919757031215Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeprotein GltS4e-74278
NC_015637:669593:6917066917066929591254Vibrio anguillarum 775 chromosome chromosome II, complete sequencesodium/glutamate symport carrier protein6e-70265
NC_014633:583858:6016386016386028311194Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencesodium/glutamate symporter1e-60233
NC_011884:2584791:2599171259917126003791209Cyanothece sp. PCC 7425, complete genomesodium/glutamate symporter8e-54211
NC_011748:4950723:4970396497039649715351140Escherichia coli 55989, complete genomeconserved hypothetical protein JemA2e-52206
CU928145:4950723:4970396497039649715351140Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein JemA2e-52206
NC_015873:2260048:2263399226339922646611263Megasphaera elsdenii DSM 20460, complete genomesodium/glutamate symporter4e-51202
NC_005070:837567:8476058476058488341230Synechococcus sp. WH 8102, complete genomeSodium/glutamate symporter6e-51201
NC_016048:1580352:1585203158520315863931191Oscillibacter valericigenes Sjm18-20, complete genomesodium/glutamate symporter8e-49194
NC_014218:4424:2340523405247271323Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomesodium/glutamate symporter7e-43174
NC_012691:2614603:2703302270330227045071206Tolumonas auensis DSM 9187, complete genomesodium/glutamate symporter1e-42174
NC_003454:822804:8316098316098328681260Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeSodium/glutamate symport carrier protein2e-32140
CU928145:4950723:496899249689924969273282Escherichia coli 55989 chromosome, complete genomeYdhA protein (fragment)6e-26119
NC_011748:4950723:496899249689924969273282Escherichia coli 55989, complete genomeYdhA protein (fragment)6e-26119