Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3097996 Shigella flexneri 2a str. 301, complete genome

Start: 3097996, End: 3098193, Length: 198

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:313770131377013137898198Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-30130
NC_008253:334467:359668359668359910243Escherichia coli 536, complete genomehypothetical protein2e-28124
NC_013364:3701895:375823437582343758431198Escherichia coli O111:H- str. 11128, complete genomehypothetical protein4e-28123
NC_011083:4547825:456442045644204564617198Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein4e-28123
NC_004431:4319152:434043343404334340855423Escherichia coli CFT073, complete genomehypothetical protein6e-28122
NC_011745:3405520:342589034258903426132243Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-27121
NC_011745:5114500:511808851180885118330243Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-27121
NC_013361:5580741:558294855829485583190243Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-27121
NC_008253:3161311:317558731755873175829243Escherichia coli 536, complete genomehypothetical protein1e-27121
NC_013353:3669500:367322336732233673420198Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-27120
AP010958:3669500:367322336732233673420198Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-27120
NC_008253:4817864:483667148366714836913243Escherichia coli 536, complete genomehypothetical protein3e-27120
NC_007946:4875997:489621848962184896415198Escherichia coli UTI89, complete genomehypothetical protein6e-27119
NC_008563:4707826:470782647078264708248423Escherichia coli APEC O1, complete genomehypothetical protein6e-27119
NC_007946:1119000:114125011412501141447198Escherichia coli UTI89, complete genomehypothetical protein8e-27118
NC_013716:5201097:521959152195915219788198Citrobacter rodentium ICC168, complete genomehypothetical protein9e-27118
NC_011750:4390000:441361544136154414037423Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-26116
NC_013716:1178383:119352511935251193809285Citrobacter rodentium ICC168, complete genomehypothetical protein3e-24110
NC_012967:3769499:379492337949233795165243Escherichia coli B str. REL606 chromosome, complete genomeAec783e-23107
NC_012947:44512:492724927249469198Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-23106
NC_009801:4882684:488659348865934886769177Escherichia coli E24377A, complete genomehypothetical protein5e-22103
NC_013941:4470932:447460444746044474819216Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-2097.4
NC_013008:4643825:464382546438254644022198Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-2097.1
NC_002695:4584177:458468045846804584877198Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-2097.1
NC_002655:4653160:465366346536634653860198Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L3e-2097.1