Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3051651 Shigella flexneri 2a str. 301, complete genome

Start: 3051651, End: 3052358, Length: 708

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:309144030914403092147708Shigella flexneri 2002017 chromosome, complete genomeNa+ channel or pump2e-93342
NC_004741:3041294:304382730438273044534708Shigella flexneri 2a str. 2457T, complete genomeputative transport protein2e-93342
NC_013364:3701895:370442837044283705135708Escherichia coli O111:H- str. 11128, complete genomeputative inner membrane protein2e-93341
NC_008253:3122148:312727131272713127978708Escherichia coli 536, complete genomeputative membrane protein YqgA2e-90332
NC_013716:5201097:527189352718935272600708Citrobacter rodentium ICC168, complete genomehypothetical protein7e-81300
NC_009792:4017510:402269940226994023406708Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-80297
NC_011149:3187022:319220331922033192910708Salmonella enterica subsp. enterica serovar Agona str. SL483,YqgA7e-78290
NC_004631:3112043:311721231172123117919708Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-78290
NC_003198:3126548:313171731317173132424708Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-78290
NC_006511:3079512:308469230846923085399708Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-78290
NC_011147:3075186:308036630803663081073708Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-78290
NC_016832:3100683:310585231058523106559708Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-78290
NC_010067:4418000:443822444382244438931708Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-76283
NC_016845:4498097:450195245019524502665714Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative transport protein5e-72270
NC_009648:3720000:372022937202293720909681Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transport protein2e-69262
NC_021066:4906239:492232749223274923040714Raoultella ornithinolytica B6, complete genomePutative inner membrane protein YqgA2e-67255
NC_020260:263528:282740282740283459720Cronobacter sakazakii Sp291, complete genomehypothetical protein5e-61234
NC_013282:3719500:372221837222183722937720Cronobacter turicensis, complete genomeUncharacterized protein yqgA5e-61234
NC_009778:259241:287620287620288240621Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-53207
NC_020181:4800298:480253048025304803246717Enterobacter aerogenes EA1509E, complete genomehypothetical protein6e-44177
NC_016612:477407:500990500990501706717Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein7e-44177
NC_015663:3466471:348237134823713482982612Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-34145
NC_015320:1690047:171059417105941711262669Archaeoglobus veneficus SNP6 chromosome, complete genomehypothetical protein2e-1376.3
NC_016629:2784000:278926727892672789956690Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein3e-1375.5
NC_002937:2068117:206811720681172068803687Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehypothetical protein6e-1374.3
NC_008751:1431905:145139014513901452076687Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeprotein of unknown function DUF5546e-1374.3
NC_007503:2010858:201085820108582011544687Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein3e-1272
NC_013939:1841890:185713618571361857828693Deferribacter desulfuricans SSM1, complete genomehypothetical protein1e-1169.7
NC_010337:1051425:107688210768821077565684Heliobacterium modesticaldum Ice1, complete genomemembrane protein, putative9e-1167.4
NC_015519:2739347:274775027477502748445696Tepidanaerobacter sp. Re1 chromosome, complete genomehypothetical protein8e-1167.4
NC_018664:287769:306274306274306954681Clostridium acidurici 9a chromosome, complete genomeprotein of unknown function DUF5541e-1066.6
NC_009328:3504454:354017435401743540875702Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein1e-1066.6
NC_015565:2879603:287960328796032880298696Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehypothetical protein2e-1066.2
NC_015573:1979202:199639919963991997094696Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein8e-1063.9
NC_010723:1014334:101544410154441016142699Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein1e-0963.5
NC_016779:1688946:170944217094421710158717Bacillus cereus F837/76 chromosome, complete genomehypothetical protein3e-0962
NC_011969:1816746:183385618338561834572717Bacillus cereus Q1 chromosome, complete genomehypothetical protein3e-0962
NC_011297:1357947:136668413666841367358675Dictyoglomus thermophilum H-6-12, complete genomehypothetical protein3e-0962
NC_011661:1542335:155106715510671551741675Dictyoglomus turgidum DSM 6724, complete genomeprotein of unknown function DUF5547e-0857.4
NC_015275:1573916:158816115881611588850690Clostridium lentocellum DSM 5427 chromosome, complete genomeprotein of unknown function DUF5545e-0755.1
NC_010718:2385400:239668023966802397387708Natranaerobius thermophilus JW/NM-WN-LF, complete genomeprotein of unknown function DUF5549e-0753.9
NC_011145:1732499:175234817523481753103756Anaeromyxobacter sp. K, complete genomeprotein of unknown function DUF5544e-0652
NC_007760:2611608:262306426230642623819756Anaeromyxobacter dehalogenans 2CP-C, complete genomeprotein of unknown function DUF5544e-0651.6
NC_014098:3372000:337419533741953374890696Bacillus tusciae DSM 2912 chromosome, complete genomeprotein of unknown function DUF5546e-0651.2