Pre_GI: BLASTP Hits

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Query: NC_004337:2098736:2103749 Shigella flexneri 2a str. 301, complete genome

Start: 2103749, End: 2104762, Length: 1014

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2153083:2158096215809621591091014Shigella flexneri 2002017 chromosome, complete genomeChain length determinant protein1e-158559
NC_004741:2081649:2086662208666220876751014Shigella flexneri 2a str. 2457T, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-158559
NC_008258:2100646:2105659210565921066721014Shigella flexneri 5 str. 8401, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-158559
NC_002655:2839600:2839600283960028406131014Escherichia coli O157:H7 EDL933, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-156551
NC_008563:2182270:2186123218612321871391017Escherichia coli APEC O1, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains6e-156550
NC_004431:2383901:2385469238546923864821014Escherichia coli CFT073, complete genomeChain length determinant protein4e-153541
NC_007946:2231872:2235818223581822368311014Escherichia coli UTI89, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-153541
NC_016902:1846492:186895318689531869930978Escherichia coli KO11FL chromosome, complete genomelipopolysaccharide biosynthesis protein8e-153540
CP002185:2233732:223592522359252236902978Escherichia coli W, complete genomeO6 antigen polymerase (periplasm)8e-153540
CP002516:1846492:186895318689531869930978Escherichia coli KO11, complete genomelipopolysaccharide biosynthesis protein8e-153540
NC_011751:2395882:239982223998222400802981Escherichia coli UMN026 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-152538
NC_002695:2769387:276938727693872770367981Escherichia coli O157:H7 str. Sakai, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-152536
NC_007606:1999870:2018463201846320194971035Shigella dysenteriae Sd197, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-151536
NC_011750:1034919:105902410590241060004981Escherichia coli IAI39 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-151535
NC_010498:1035406:105479910547991055779981Escherichia coli SMS-3-5, complete genomechain length determinant protein3e-151535
NC_011353:2734222:273422227342222735199978Escherichia coli O157:H7 str. EC4115 chromosome, complete genomechain length determinant protein4e-151534
NC_013008:2733203:273320327332032734180978Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-151534
NC_012967:2025127:202732320273232028306984Escherichia coli B str. REL606 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-151533
NC_012947:1720732:174570417457041746684981Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelipopolysaccharide biosynthesis protein1e-150533
AC_000091:2096672:209945820994582100438981Escherichia coli W3110 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-149529
NC_000913:2092559:209534520953452096325981Escherichia coli K12, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-149529
NC_010473:2183567:218635321863532187333981Escherichia coli str. K-12 substr. DH10B, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-149529
NC_012759:1983975:198782819878281988808981Escherichia coli BW2952 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-149529
NC_013941:2544569:2549493254949325505301038Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeO-antigen chain length determinant Wzz3e-149528
NC_008253:2134110:213567721356772136654978Escherichia coli 536, complete genomechain length determinant protein2e-148525
NC_010468:1775000:179707217970721798052981Escherichia coli ATCC 8739, complete genomelipopolysaccharide biosynthesis protein6e-147520
NC_011415:2346474:235139523513952352372978Escherichia coli SE11 chromosome, complete genomeO-antigen chain length determinant protein2e-142504
NC_010658:1090104:1113117111311711141511035Shigella boydii CDC 3083-94, complete genomechain length determinant protein3e-140498
NC_011742:2093503:209743220974322098409978Escherichia coli S88 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-139496
NC_011748:2324495:232835023283502329330981Escherichia coli 55989, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-140496
CU928145:2324495:232835023283502329330981Escherichia coli 55989 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-140496
NC_009801:2276131:2279985227998522810191035Escherichia coli E24377A, complete genomechain length determinant protein1e-139495
NC_013361:2848949:285114628511462852123978Escherichia coli O26:H11 str. 11368 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-139495
NC_013353:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-138492
AP010958:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-138492
NC_007613:864084:8668718668718679051035Shigella boydii Sb227, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-137489
NC_011745:2302979:2306833230683323078671035Escherichia coli ED1a chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-137488
NC_011601:2211917:221586022158602216837978Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-136485
NC_011741:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-136483
CU928160:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-136483
NC_013716:2255102:226001822600182261004987Citrobacter rodentium ICC168, complete genomechain length determinant protein6e-116417
NC_011740:2135141:213514121351412136121981Escherichia fergusonii ATCC 35469, complete genomeChain length determinant protein (Polysaccharide antigen chain regulator)7e-112403
NC_009792:714953:734440734440735423984Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-109395
NC_012125:1693774:171410117141011715078978Salmonella enterica subsp. enterica serovar Paratyphi C strainpolysaccharide chain length regulator1e-108392
NC_011080:2161696:216553421655342166517984Salmonella enterica subsp. enterica serovar Newport str. SL254,chain length determinant protein4e-108391
NC_011294:2156425:216026121602612161244984Salmonella enterica subsp. enterica serovar Enteritidis strpolysaccharide chain length regulator2e-107389
NC_011094:2172271:217611021761102177093984Salmonella enterica subsp. enterica serovar Schwarzengrund strchain length determinant protein2e-107389
NC_016810:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium strpolysaccharide chain length regulator7e-107387
NC_011205:2283438:228727622872762288259984Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chain length determinant protein7e-107387
NC_003197:2152994:215683221568322157815984Salmonella typhimurium LT2, complete genomelipopolysaccharide O-antigen chain length regulator7e-107387
NC_011149:2110861:211469921146992115682984Salmonella enterica subsp. enterica serovar Agona str. SL483,chain length determinant protein7e-107387
NC_010102:861860:887990887990888967978Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-107387
NC_016856:2204546:220838422083842209367984Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Slipopolysaccharide O-antigen chain length regulator7e-107387
NC_016857:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lipopolysaccharide O-antigen chain length regulator7e-107387
NC_016832:861956:889286889286890269984Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Chain length determinant protein6e-107387
NC_004631:862002:889332889332890315984Salmonella enterica subsp. enterica serovar Typhi Ty2, completepolysaccharide chain length regulator6e-107387
NC_003198:2109775:211361321136132114596984Salmonella enterica subsp. enterica serovar Typhi str. CT18,polysaccharide chain length regulator6e-107387
NC_016863:2152739:215657721565772157560984Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1lipopolysaccharide O-antigen chain length regulator7e-107387
NC_016860:2148535:215237321523732153356984Salmonella enterica subsp. enterica serovar Typhimurium strchain length determinant protein7e-107387
NC_017046:2150072:215391021539102154887978Salmonella enterica subsp. enterica serovar Typhimurium str. 798polysaccharide chain length regulator1e-106386
NC_011083:2200613:220445122044512205428978Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,chain length determinant protein1e-106386
NC_006511:854785:887812887812888789978Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpolysaccharide chain length regulator3e-106385
NC_011147:854730:881987881987882964978Salmonella enterica subsp. enterica serovar Paratyphi A strpolysaccharide chain length regulator3e-106385
NC_006905:2175361:2178135217813521791721038Salmonella enterica subsp. enterica serovar Choleraesuis strregulator of length of O-antigen component of lipopolysaccharide chains3e-106385
NC_016831:854973:882311882311883288978Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpolysaccharide chain length regulator2e-106385
NC_011274:2147427:215126321512632152246984Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91polysaccharide chain length regulator2e-106385
NC_015761:2062345:206619920661992067182984Salmonella bongori NCTC 12419, complete genomepolysaccharide chain length regulator2e-102372
NC_020260:1184174:120322312032231204215993Cronobacter sakazakii Sp291, complete genomechain length determinant protein WzzB3e-101368
NC_010067:807129:825425825425826408984Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-101368
NC_009778:1141716:1161724116172411627341011Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-101368
NC_013364:2672837:267558426755842676567984Escherichia coli O111:H- str. 11128, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-100366
NC_013282:2827757:2832655283265528336651011Cronobacter turicensis, complete genomeChain length determinant protein3e-100365
NC_016514:3048883:305373930537393054719981Enterobacter cloacae EcWSU1 chromosome, complete genomechain length determinant protein7e-96350
NC_014121:3399685:340348234034823404462981Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completechain length determinant protein4e-94345
NC_020063:1659795:168299716829971683974978Enterobacteriaceae bacterium strain FGI 57, complete genomechain length determinant protein7e-92337
NC_009436:2836847:283684728368472837845999Enterobacter sp. 638, complete genomelipopolysaccharide biosynthesis protein2e-91335
NC_016816:1676460:1702320170232017033241005Pantoea ananatis LMG 5342, complete genomepolysaccharide antigen chain regulator2e-51203
NC_010939:1633000:1638201163820116393131113Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeWzz-like protein5e-1582
NC_012691:2225000:2243045224304522441631119Tolumonas auensis DSM 9187, complete genomelipopolysaccharide biosynthesis protein4e-1375.9
NC_010278:1625695:1633173163317316342851113Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,Wzz-like protein1e-1274.3
NC_009655:866281:8730508730508740901041Actinobacillus succinogenes 130Z chromosome, complete genomelipopolysaccharide biosynthesis protein7e-0652