Pre_GI: BLASTP Hits

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Query: NC_004129:3965947:3967677 Pseudomonas fluorescens Pf-5, complete genome

Start: 3967677, End: 3968756, Length: 1080

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009142:1701000:1717623171762317186721050Saccharopolyspora erythraea NRRL 2338, complete genomesaccharopine dehydrogenase3e-81302
NC_020126:204216:2217962217962229141119Myxococcus stipitatus DSM 14675, complete genomehypothetical protein5e-70265
NC_015957:7408466:7433212743321274342401029Streptomyces violaceusniger Tu 4113 chromosome, complete genomeSaccharopine dehydrogenase2e-41169
NC_012660:4669500:468146846814684682445978Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-36152
NC_014960:1670778:1673710167371016747651056Anaerolinea thermophila UNI-1, complete genomesaccharopine dehydrogenase family protein5e-1582.4
NC_008541:4066294:4067228406722840684601233Arthrobacter sp. FB24 chromosome 1, complete sequenceSaccharopine dehydrogenase2e-1273.6
NC_007908:4677856:4677856467785646789711116Rhodoferax ferrireducens T118, complete genomeSaccharopine dehydrogenase2e-0963.9
NC_010612:4654936:4655640465564046568961257Mycobacterium marinum M, complete genomehypothetical protein5e-0962.4
NC_002677:173170:1731701731701744261257Mycobacterium leprae TN, complete genomehypothetical protein2e-0860.8
NC_011896:173197:1731971731971744531257Mycobacterium leprae Br4923, complete genomehypothetical protein2e-0860.8
NC_011729:4073761:4076222407622240773251104Cyanothece sp. PCC 7424 chromosome, complete genomesaccharopine dehydrogenase1e-0860.8
NC_017506:1832443:1850088185008818513291242Marinobacter adhaerens HP15 chromosome, complete genomesaccharopine dehydrogenase-like protein3e-0859.7
NC_000962:3288464:3305279330527933065351257Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein7e-0858.5
NC_002945:3246278:3261967326196732632231257Mycobacterium bovis AF2122/97, complete genomehypothetical protein7e-0858.5
NC_008769:3242453:3259440325944032606961257Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein7e-0858.5
NC_009525:3300456:3317271331727133185271257Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein7e-0858.5
NC_012207:3237440:3252267325226732535231257Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein7e-0858.5
NC_002755:3282785:3299600329960033008561257Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein7e-0858.5
NC_009565:3299937:3316752331675233180081257Mycobacterium tuberculosis F11, complete genomehypothetical protein7e-0858.5
NC_016804:3221818:3238805323880532400611257Mycobacterium bovis BCG str. Mexico chromosome, complete genomeTrans-acting enoyl reductase7e-0858.5
NC_017026:3282405:3299224329922433004801257Mycobacterium tuberculosis RGTB327 chromosome, complete genomeTrans-acting enoyl reductase7e-0858.5
NC_015848:3343731:3361900336190033631561257Mycobacterium canettii CIPT 140010059, complete genomehypothetical protein2e-0757
NC_019950:3306419:3326209332620933274651257Mycobacterium canettii CIPT 140060008 complete genomePutative trans-acting enoyl reductase2e-0757
NC_017955:3731480:3735333373533337363821050Modestobacter marinus, complete genomehypothetical protein4e-0652.8