Pre_GI: BLASTP Hits

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Query: NC_003888:7028165:7056189 Streptomyces coelicolor A3(2), complete genome

Start: 7056189, End: 7057292, Length: 1104

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:336500:3380803380803394861407Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase1e-28127
NC_013595:235931:2391562391562402351080Streptosporangium roseum DSM 43021, complete genomeSerine phosphatase RsbU regulator of sigma subunit-like protein5e-26119
NC_013131:5226919:5246261524626152474481188Catenulispora acidiphila DSM 44928, complete genomeprotein serine/threonine phosphatase1e-22107
NC_015656:4879904:4895368489536848964921125Frankia symbiont of Datisca glomerata chromosome, complete genomeprotein serine/threonine phosphatase8e-21101
NC_009664:4423829:4594883459488345960851203Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein4e-2099
NC_017955:3670670:3687246368724636883611116Modestobacter marinus, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-1686.3
NC_003888:1395319:1402574140257414037371164Streptomyces coelicolor A3(2), complete genomeintegral membrane protein4e-1582.8
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase2e-1067.4
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein2e-1067
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase1e-0964.3
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit2e-0963.9
NC_015573:569625:571222571222571938717Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeprotein serine/threonine phosphatase1e-0861.2
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein1e-0861.2
NC_017271:4193000:4216781421678142188412061Xanthomonas campestris pv. raphani 756C chromosome, completeIcfG protein2e-0860.8
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit3e-0859.7
NC_010688:673454:6734546734546755142061Xanthomonas campestris pv. campestris, complete genomeadenylate cyclase6e-0858.5
NC_012559:768939:7871377871377896412505Laribacter hongkongensis HLHK9, complete genomePutative PAS/PAC sensor protein9e-0858.2
NC_016010:637535:6375356375356396432109Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSerine phosphatase RsbU, regulator of sigma subunit1e-0758.2
NC_003888:5114147:511993851199385120483546Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0757
NC_014815:3005970:3022239302223930234501212Micromonospora sp. L5 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase2e-0757
NC_014377:1512217:151438815143881515113726Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein serine/threonine phosphatase6e-0755.5
NC_015434:6020178:6020178602017860213141137Verrucosispora maris AB-18-032 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase7e-0755.1
NC_000911:1191445:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein1e-0654.7
NC_017039:1192111:1197517119751711994211905Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeICFG protein1e-0654.7
NC_017052:1192099:1197505119750511994091905Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeICFG protein1e-0654.7
NC_017277:1192485:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein1e-0654.7
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator1e-0654.3
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-0653.1
NC_013510:4960500:4961196496119649624131218Thermomonospora curvata DSM 43183, complete genomeprotein serine/threonine phosphatase5e-0652.8
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase5e-0652.4
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase7e-0652