Pre_GI: BLASTP Hits

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Query: NC_003888:4927170:4949109 Streptomyces coelicolor A3(2), complete genome

Start: 4949109, End: 4950017, Length: 909

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:2678544:270438327043832705282900Streptomyces violaceusniger Tu 4113 chromosome, complete genomeType II secretion system F domain-containing protein3e-24112
NC_013131:7945280:796116879611687962061894Catenulispora acidiphila DSM 44928, complete genometype II secretion system protein6e-23108
NC_016582:10137951:101402081014020810141107900Streptomyces bingchenggensis BCW-1 chromosome, complete genometype II secretion system protein1e-21103
NC_017186:7822448:783870278387027839553852Amycolatopsis mediterranei S699 chromosome, complete genometype II secretion system protein3e-1479.3
NC_014318:7821227:783865678386567839507852Amycolatopsis mediterranei U32 chromosome, complete genometype II secretion system protein3e-1479.3
NC_014210:1471752:152616515261651527058894Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Type II secretion system F domain protein4e-1479
NC_017955:3731480:379536637953663796274909Modestobacter marinus, complete genometype II secretion system protein F5e-1272
NC_016943:1735057:173505717350571735956900Blastococcus saxobsidens DD2, complete genomeputative Type II secretion system protein F4e-1065.5
NC_003155:210240:212678212678213562885Streptomyces avermitilis MA-4680, complete genomeintegral membrane protein1e-0964.3
NC_016512:15102:406744067441576903Propionibacterium acnes TypeIA2 P.acn17 chromosome, completetype II secretion system F domain protein6e-0961.6
NC_016516:15102:406744067441576903Propionibacterium acnes TypeIA2 P.acn33 chromosome, completetype II secretion system F domain protein1e-0860.8
NC_006085:15246:408404084041742903Propionibacterium acnes KPA171202, complete genomemembrane associated protein2e-0860.1
NC_014039:15236:408024080241704903Propionibacterium acnes SK137 chromosome, complete genometype II secretion system F domain protein2e-0860.1