Pre_GI: BLASTP Hits

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Query: NC_003888:4031299:4038637 Streptomyces coelicolor A3(2), complete genome

Start: 4038637, End: 4040280, Length: 1644

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016887:1093609:1098705109870511003961692Nocardia cyriacigeorgica GUH-2, complete genomeputative phage Integrase7e-43175
NC_003888:4750489:4754366475436647560151650Streptomyces coelicolor A3(2), complete genomeintegrase1e-38161
NC_014659:3654979:3670491367049136723291839Rhodococcus equi 103S, complete genomephague integrase1e-37158
NC_016947:4500329:4506220450622045077461527Mycobacterium intracellulare MOTT-02 chromosome, complete genomephague integrase2e-34147
NC_017904:2724941:2741824274182427432421419Mycobacterium sp. MOTT36Y chromosome, complete genomephage Integrase3e-33143
NC_008268:7052202:7055865705586570576071743Rhodococcus sp. RHA1, complete genomepossible integrase3e-30133
NC_016948:419500:4334974334974348431347Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein9e-26119
NC_014210:618500:6252376252376267991563Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Resolvase domain protein1e-25118
NC_018581:3871000:3874713387471338763081596Gordonia sp. KTR9 chromosome, complete genomeintegrase3e-20100
NC_016109:785819:7951807951807968651686Kitasatospora setae KM-6054, complete genomehypothetical protein4e-1790.1
NC_008699:1132790:1150783115078311521801398Nocardioides sp. JS614, complete genomeRecombinase1e-1172
NC_009953:1364500:1375587137558713772631677Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein1e-1171.6
NC_009454:136468:1560681560681575431476Pelotomaculum thermopropionicum SI, complete genomehypothetical protein3e-1170.5
NC_003888:2814360:2823656282365628252121557Streptomyces coelicolor A3(2), complete genomeintegrase4e-1170.1
NC_009720:583060:5876205876205892451626Xanthobacter autotrophicus Py2, complete genome7e-1169.3
NC_013169:805124:8088908088908104791590Kytococcus sedentarius DSM 20547, complete genomesite-specific recombinase, DNA invertase Pin6e-1066.2
NC_019673:8581000:8588980858898085905901611Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0965.5
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)3e-0964.3
NC_016111:1766010:1771318177131817727361419Streptomyces cattleya NRRL 8057, complete genomeintegrase1e-0862
NC_008278:3025899:3036981303698130384171437Frankia alni ACN14a, complete genomehypothetical protein2e-0861.2
NC_014365:2037506:2051634205163420532201587Desulfarculus baarsii DSM 2075 chromosome, complete genomeResolvase domain protein2e-0861.2
NC_008278:296526:3036833036833051191437Frankia alni ACN14a, complete genomeputative integrase/recombinase.2e-0860.8
NC_012914:1851102:1881221188122118829031683Paenibacillus sp. JDR-2, complete genomeResolvase domain protein4e-0860.1
NC_009089:581655:6044276044276060281602Clostridium difficile 630, complete genomeconjugative transposon site-specific recombinase5e-0860.1
NC_010617:988758:1005896100589610072811386Kocuria rhizophila DC2201, complete genomeputative recombinase1e-0758.5
NC_010338:4530403:4545638454563845473771740Caulobacter sp. K31, complete genomeResolvase domain3e-0757.4
NC_018678:1820390:183113018311301831720591Alteromonas macleodii str. 'English Channel 673' chromosome,resolvase3e-0757
NC_008576:3307297:3314177331417733155141338Magnetococcus sp. MC-1, complete genomeResolvase, N-terminal domain8e-0755.8
NC_003155:6667928:6710346671034667118481503Streptomyces avermitilis MA-4680, complete genomeintegrase/recombinase1e-0655.1
NC_013440:1580802:1592997159299715946011605Haliangium ochraceum DSM 14365, complete genomeResolvase domain protein2e-0654.7
NC_013722:2810721:2842626284262628440141389Xanthomonas albilineans, complete genomeputative site-specific integrase protein2e-0654.7
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein3e-0653.9
NC_009952:366959:3861373861373878131677Dinoroseobacter shibae DFL 12, complete genomerecombinase7e-0652.8