Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2833700 Streptomyces coelicolor A3(2), complete genome

Start: 2833700, End: 2834725, Length: 1026

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6663889:668511766851176686070954Streptomyces scabiei 87.22 chromosome, complete genomerod shape-determining protein3e-114411
NC_016111:1766010:183241818324181833326909Streptomyces cattleya NRRL 8057, complete genomeRod shape-determining protein5e-94344
NC_011296:1750771:176900017690001769764765Thermodesulfovibrio yellowstonii DSM 11347, complete genomerod shape-determining protein MreC3e-1066.2
NC_021182:2160580:216675621667562167601846Clostridium pasteurianum BC1, complete genomerod shape-determining protein MreC5e-1065.5
NC_014328:794000:802055802055802918864Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative rod shape-determining protein MreC3e-0963.2
NC_013928:9494:235382353824356819Streptococcus mutans NN2025, complete genomecell shape-determining protein4e-0962.8
NC_009706:830461:867121867121867981861Clostridium kluyveri DSM 555 chromosome, complete genomerod shape-determining protein MreC6e-0962
NC_017295:1375180:138248413824841383335852Clostridium acetobutylicum EA 2018 chromosome, complete genomeShape-determining protein mreC3e-0859.7
NC_015687:1377367:138467113846711385522852Clostridium acetobutylicum DSM 1731 chromosome, complete genomerod shape-determining protein MreC3e-0859.7
NC_003030:1375764:138306813830681383919852Clostridium acetobutylicum ATCC 824, complete genomeShape-determining protein mreC3e-0859.7
NC_009617:588897:593149593149593997849Clostridium beijerinckii NCIMB 8052 chromosome, complete genomerod shape-determining protein MreC1e-0757.8
NC_004757:2213806:224753022475302248447918Nitrosomonas europaea ATCC 19718, complete genomeputative rod shape-determining MreC transmembrane protein2e-0757.4
NC_012563:3416509:343178634317863432643858Clostridium botulinum A2 str. Kyoto, complete genomerod shape-determining protein MreC2e-0757
NC_009699:3217315:323582732358273236672846Clostridium botulinum F str. Langeland chromosome, complete genomerod shape-determining protein MreC2e-0757
NC_009482:87193:107275107275108012738Synechococcus sp. RCC307 chromosome, complete genomerod shape-determining protein MreC2e-0756.6
NC_010516:3234791:325330332533033254148846Clostridium botulinum B1 str. Okra, complete genomerod shape-determining protein MreC2e-0756.6
NC_009698:3046833:306533430653343066179846Clostridium botulinum A str. Hall chromosome, complete genomerod shape-determining protein MreC3e-0756.6
NC_004344:672550:676502676502677410909Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein1e-0654.7
NC_003902:4111283:4130475413047541318241350Xanthomonas campestris pv. campestris str. ATCC 33913, completerod shape-determining protein1e-0654.3
NC_017271:4058642:4075044407504440764171374Xanthomonas campestris pv. raphani 756C chromosome, completerod shape-determining protein1e-0654.3
NC_011365:592256:649878649878650783906Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomerod shape-determining protein MreC4e-0652.8
NC_015437:438538:4673824673824684581077Selenomonas sputigena ATCC 35185 chromosome, complete genomerod shape-determining protein MreC4e-0652.4
NC_008817:1574506:159462615946261595375750Prochlorococcus marinus str. MIT 9515, complete genomeputative rod shape-determining protein8e-0651.6
NC_007759:623116:624333624333625166834Syntrophus aciditrophicus SB, complete genomerod shape-determining protein8e-0651.6
NC_005957:4244019:424698142469814247832852Bacillus thuringiensis serovar konkukian str. 97-27, completerod shape-determining protein1e-0551.2